RNA id: TU162897


Basic Information

Item Value
RNA id TU162897
length 403
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G110216
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 6140539 ~ 6141321 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGGAGTTAGTTCTGATCTTGTCTTCTTTCAGGACGCTTCTGATGGTTCTGCTCTTGTGCTCCACGACACATTCATACTCGTTCTTCTGCCACTCCTCAGGTTTAACGTTGAGGGTGCTGGTCTTCTGGAAAGAGCCGTCTTCATTGGGAAGAAGTTCACCCAGATCCACATCTTCATCAACATCTTGTTTGTTCTTCTGCCAGGAGATAGAAACCTCTCTGGGATAAAAACCTGTAGCGTGACACAAGACCGGAGACGAAGGAGACTTCTGCAGAAGAGACACCTGaggagagactgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagagagacagagagagacagagagagagaga

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162905 lncRNA downstream 20772 6118785 ~ 6119767 (-) True G110221
TU162879 lncRNA downstream 141178 5997621 ~ 5999361 (-) True G110206
TU162695 lncRNA downstream 287777 5852432 ~ 5852762 (-) True G110106
TU162691 lncRNA downstream 323666 5815560 ~ 5816873 (-) True G110102
TU162688 lncRNA downstream 326855 5809971 ~ 5813684 (-) True G110100
TU162898 lncRNA upstream 683 6142004 ~ 6142840 (-) False G110217
TU162900 lncRNA upstream 683 6142004 ~ 6142840 (-) False G110217
TU162901 lncRNA upstream 683 6142004 ~ 6142840 (-) True G110217
XR_006252729.1 lncRNA upstream 36082 6177403 ~ 6180508 (-) True LOC122359843
TU162871 lncRNA upstream 41704 6183025 ~ 6184133 (-) False LOC122359839
XM_043260030.1 mRNA downstream 191741 5903040 ~ 5948798 (-) True LOC122359839
XM_043261145.1 mRNA downstream 240329 5877049 ~ 5900210 (-) False celf3b
XM_043260033.1 mRNA upstream 107598 6248919 ~ 6261997 (-) True tars2
XM_043260029.1 mRNA upstream 122183 6263504 ~ 6279577 (-) False rprd2b
XM_043260028.1 mRNA upstream 122183 6263504 ~ 6279575 (-) True rprd2b
XM_043260027.1 mRNA upstream 138388 6279709 ~ 6339496 (-) True LOC122359836
XM_043260113.1 mRNA upstream 420529 6561850 ~ 6566189 (-) False irx1a
TU162893 other downstream 40612 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 105762 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 191750 5944221 ~ 5948789 (-) False LOC122359839
TU162692 other downstream 322177 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 780860 5359510 ~ 5359679 (-) True LOC122361376
TU163014 other upstream 940641 7081962 ~ 7083524 (-) True G110303
TU163032 other upstream 1054169 7195490 ~ 7201381 (-) True LOC122360222
TU163145 other upstream 1469308 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 1469513 7610834 ~ 7618585 (-) False cdkal1
TU163187 other upstream 1687499 7828820 ~ 7830717 (-) False LOC122360680

Expression Profile