RNA id: TU162901



Basic Information


Item Value
RNA id TU162901
length 751
lncRNA type inter_gene
GC content 0.32
exon number 3
gene id G110217
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 6142004 ~ 6142840 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ACCTTTTTgtgaggtttatttatttttaaagaatccaaataatattacaatgttttgAAGGTAACcaatatacaaaaaacaatcctgtaatttaatttattaacctCAAATAAAGAAAGATAGGCTGTAAAGTACAGGTCATGTAAAGTTTAACATTACAAgaatcaatattattttatagtacaCTTATCATCTTATCTAAATTATATCTAACCAAAagaattaagaaaataaacagaaaaagccCCATAATCccgcacaaaaaaataaaataagattcttacatattgtttcattttattgatgTAATAGCTTAATTTAACAATTCATCCAAAAAGTTATTGTAAGTTTTGCAGCAGATACAGACTTTGCTCTCATTCCCCAGATTTATTTAGATTCTATCAAGATGAACATAAAGAAAGATGAAACAAAAACTTTACTTTCCAGATGTGATTAATATAAAACCATAATATAGATCAACCCTCCACTGAAGTAtaagatgtgtgtgtgtgtgtctgtatctgtgtgtgtgttcctgtgtgtgtgtctgtatctgtgtgtgtgtttctgtgtgtgtgtctgtgtctatgtgtgtgtttctgtgtgtgtgtctgtatctgtgtgtgtgtgtgtgtttctgtgtgtgtgtctgtatctgtgtgtgtgtgtgtgtgtgtgtttgttgtaagCAAGATGGACAGCAGGACAAGCATCTTCTTTTAACTTCATCTCTTGCACTCATCTGGTCTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU162897 lncRNA downstream 683 6140539 ~ 6141321 (-) True G110216
TU162905 lncRNA downstream 22237 6118785 ~ 6119767 (-) True G110221
TU162879 lncRNA downstream 142643 5997621 ~ 5999361 (-) True G110206
TU162695 lncRNA downstream 289242 5852432 ~ 5852762 (-) True G110106
TU162691 lncRNA downstream 325131 5815560 ~ 5816873 (-) True G110102
XR_006252729.1 lncRNA upstream 34563 6177403 ~ 6180508 (-) True LOC122359843
TU162871 lncRNA upstream 40185 6183025 ~ 6184133 (-) False LOC122359839
TU162862 lncRNA upstream 48170 6191010 ~ 6194634 (-) True G110199
TU162909 lncRNA upstream 58549 6201389 ~ 6203889 (-) True G110223
TU162877 lncRNA upstream 137188 6280028 ~ 6280291 (-) False LOC122359836
XM_043260030.1 mRNA downstream 193206 5903040 ~ 5948798 (-) True LOC122359839
XM_043261145.1 mRNA downstream 241794 5877049 ~ 5900210 (-) False celf3b
XM_043260033.1 mRNA upstream 106079 6248919 ~ 6261997 (-) True tars2
XM_043260029.1 mRNA upstream 120664 6263504 ~ 6279577 (-) False rprd2b
XM_043260028.1 mRNA upstream 120664 6263504 ~ 6279575 (-) True rprd2b
XM_043260027.1 mRNA upstream 136869 6279709 ~ 6339496 (-) True LOC122359836
XM_043260113.1 mRNA upstream 419010 6561850 ~ 6566189 (-) False irx1a
TU162893 other downstream 42077 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 107227 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 193215 5944221 ~ 5948789 (-) False LOC122359839
TU162692 other downstream 323642 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 782325 5359510 ~ 5359679 (-) True LOC122361376
TU163014 other upstream 939122 7081962 ~ 7083524 (-) True G110303
TU163032 other upstream 1052650 7195490 ~ 7201381 (-) True LOC122360222
TU163145 other upstream 1467789 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 1467994 7610834 ~ 7618585 (-) False cdkal1
TU163187 other upstream 1685980 7828820 ~ 7830717 (-) False LOC122360680

Expression Profile