RNA id: TU162910


Basic Information

Item Value
RNA id TU162910
length 2635
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G110224
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 6137107 ~ 6207805 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttccaaaggagGTTTATAAAAACTCTCCACACAGGTTTTATACTCTGATCCAAACCTAGTTTGTTTCTCCAAACAGTATCAGATCTTCCATTTAAagacttcaaatttaaaattttaacacagcttttgtatagttttttacTATCAGCTTCATTAATAGTTAACTCCTCcaaatttttaacaaatccCCATCTGCACCTTTTTAAGATCAGGAGTAATAAAAACCTCTGGAAAAGGATCATTGTTATTTGGAACCACCTTTCCTTCATCATAACTTATAAGAACAGATTTTTCTTCTACAGTAATCTTCTGTTTTAAGAGATCCAGTAATTTCCTTACTAATCTTGTTGACTTGACTCCAATGCAAGAAGCAACTTTTGTGAGTTATTTAACTCAGAACCTCCAGCAGCTATAATGTCAGAAAATTTGACTTTTCTTGCTCTACAGAGTGCATTTTCGAAACCCCAAGTAGTTTCACTTAAAACATCAAACCTAGCCCCAAACACAATAGGCTCTCTTCCAATAACCAATATAAAGACAAACCAAAAGCCctcttcttttcttaaaaactcCAGATTTTAAAAACCCCTTTATAAAATGGGGTCAGTCCACTCAGCTGAATTTTACTGGAGTCCATTAAGAACAAAGTAGAATCCAGTCCCAGTCCTCCGGCTtgactcaaaataaattttgcaacATTCCTCCACACAAGATCTTCTGTCcagttaaaaatctttgaataaattgtaaacGAAAAAGTTGCTCCTCTGCTGGCCAGATGTACAAGCCCTTGACCCCTTCATCTTTAGGGGAGATACAGTACACTCTGGGGTACCCAGTGAAACTTAGTCCAAAAAAGTCCACAATAAGAGCCTGTAGTTTTGCAAGAAGTCCACTTGGGGTTCTGTACATGCCAAGCGGTGCCAGAATGTTGAAGCAACCAAATTATTGATGATTATAATGCGAcctctaaatgacattttaggccACAACCATTTCCACTTTTCCAATCgtccttttgttttttctaaaacaccCTCCCAGTTTTTTTGCAATGTCGAGTCTTCTCCAAGGTATACACCTAAATACTTAAAGCCATTTTTCTTCCATTCAAGTCCAGCAGGTAGATTAGGAGACATTTAGCCTCCCACTTTCCACATATAACAGCTTCACTCTTATTCCAGTTTACCTTCGCTGAAGACAGCTTCCAAAATCATCaatcattttcttaaattatCTACTTCTTCTTgcttattcacaaaaacaataacatcatcagcataagccgacagcttaattttaaaatcacattgtgGTATACTCCAGCCATCAATCTTTGCCCTTATTCTCACTAACAGTGGTTCAATTGCTAAAGCATACAACATGCCTGACAAAGCACATCCTTGCCTTATGCCCTTGTGATCTTAAAAGGAGCACTCAGGCCACCGTTAATTTTAAGTATACTCTCAATGTTTCCATACAACACCccaattactttaataaaactcGGCTGAAACCAAACTCTTAGCGTCCGCCAGAGGTAGTTATGCTCAACCCGgtcaaaagctttctcttggtCCAAGGAAATGAGACCAACGTTTAAACCCAATGATCTAGAGATATCAAAAATGTCTctgattaaatgaatgttatCAAAAATAGATCTGTTAGGTACACAGTATGTCTGGTCCACATGGATGACCCAACCAATCGCCTCTTTTAATCTAATTGCTAAGGCTTTagacaaaattttaaaatcagagcATAGGAGTGAAACAGGTCGCCAGTTCTTTATATTTCTGAGGTCACCTTTCTTCGGTAAAAGGGTGATGACCGCTCTTCTGCAGCTCGTAGGCAGCAACCCTCTGGTCAAACTGTCATTGAGCATTTCTAGCAGATCATCTCCTAACACAGCCCAGAGTGACTTATAAAACTCGACTGGGATACCATCAATCCCGGAGCTTTCCAACACTCCATACTCTTTAGGGCATCATACAATTCACCACCTTTCGTAAAAGGTTTTTCCAGTTCAGCATTTGTCCCTTCCGGAACCTTAGGTAGACCCTCATAAAAGCAACTGGCTATCTCTTCCCACCTCCGTGTATTCACTCCTGTACAGCTCTGAATAAAAAGCCACTGCTCTTTTCCTAATCTCCTTAGGCTCTGTGATTTCTGTGCCAGATTCTGATAATAACGAATGCATAATTCTATTTAAGCCATTCTTTTTTTCAAGGCCAAAGAAAAACTTGGTTGGACCATCCATTTGTGCTGCACTTTGAAACCTTGATCGTACCAGAGCACCCTGTGCCCTAATACCCAACAAATCATCTAAagctttccttttatttttgagaacTTTAATACGTTCTCTATCTCTTACCAAATCCAAAGAATTTTGTATCTCTAAAATTTCCTTCTCTAGAGCTTCCAACAATTGGGAAATGTTCTTAGAAGCATTGAAAGTATATAAGCGGCACAGTTGCTGTATCTGTATTTTTCCATTATCCCACCATTGCTGCAGAGAAACAAAGGATGACTTCCTATTCCTAAAATTTTcccaaaaagatttaaaaacctCACAAAACAATTTGTCTTGCAGTAGaccaatattaaaatgccaATATGCACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162905 lncRNA downstream 17340 6118785 ~ 6119767 (-) True G110221
TU162879 lncRNA downstream 137746 5997621 ~ 5999361 (-) True G110206
TU162695 lncRNA downstream 284345 5852432 ~ 5852762 (-) True G110106
TU162691 lncRNA downstream 320234 5815560 ~ 5816873 (-) True G110102
TU162688 lncRNA downstream 323423 5809971 ~ 5813684 (-) True G110100
TU162877 lncRNA upstream 72223 6280028 ~ 6280291 (-) False LOC122359836
XR_006252833.1 lncRNA upstream 477695 6685500 ~ 6688903 (-) True LOC122360716
TU163020 lncRNA upstream 881921 7089726 ~ 7091063 (-) True G110307
TU163030 lncRNA upstream 986733 7194538 ~ 7195316 (-) True G110315
XR_006252790.1 lncRNA upstream 1086377 7294182 ~ 7296238 (-) True LOC122360226
XM_043260030.1 mRNA downstream 188309 5903040 ~ 5948798 (-) True LOC122359839
XM_043261145.1 mRNA downstream 236897 5877049 ~ 5900210 (-) False celf3b
XM_043260033.1 mRNA upstream 41114 6248919 ~ 6261997 (-) True tars2
XM_043260029.1 mRNA upstream 55699 6263504 ~ 6279577 (-) False rprd2b
XM_043260028.1 mRNA upstream 55699 6263504 ~ 6279575 (-) True rprd2b
XM_043260027.1 mRNA upstream 71904 6279709 ~ 6339496 (-) True LOC122359836
XM_043260113.1 mRNA upstream 354045 6561850 ~ 6566189 (-) False irx1a
TU162893 other downstream 37180 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 102330 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 188318 5944221 ~ 5948789 (-) False LOC122359839
TU162692 other downstream 318745 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 777428 5359510 ~ 5359679 (-) True LOC122361376
TU163014 other upstream 874157 7081962 ~ 7083524 (-) True G110303
TU163032 other upstream 987685 7195490 ~ 7201381 (-) True LOC122360222
TU163145 other upstream 1402824 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 1403029 7610834 ~ 7618585 (-) False cdkal1
TU163187 other upstream 1621015 7828820 ~ 7830717 (-) False LOC122360680

Expression Profile