RNA id: TU163014


Basic Information

Item Value
RNA id TU163014
length 1517
RNA type TUCP
GC content 0.39
exon number 3
gene id G110303
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7081962 ~ 7083524 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCTAAAGACCGCTCGGCACACCGAGAACACCGCAACGCTTTCAGAATTATTGTaatgcatgtttacattttctagTTTTGATATAATAGTGCCCtatgaaatatttcattgttttctaaAAGTGCTATCAGAATTTCCCTGGACTTATGTaatctaaaaaattaaaaaaaaatctgtactgaacaaatgaaggcataaaacaattaatttcttttaaaaaatgtgaaaatttgtGCTGTTTAACAGAGCTCTActgttaaaactgaaaattatgtgatatttaattatCTGATACAAAATATTAGTACTACAAGCTAATAGATTTTATTTGGGTTTTCTCTGTATCtcttattagatttttttttttttaaataaatgctgctgaaaGACTCTTAGATGACGTTCATGTGTAAATATACTGTTttcagtgaacacacacacacacacagacacacacacacacagacacacacacagacacagacacacacagacagacacacacacagacacacacacacagagacacacacacacagagacacacacacacacacacgtccacATCACCATCTGATTAAATGCACAGAATTCTGCATGATTGATCTAATATTCCACGAGATCTCCTGTCTTCTGTCTGAAGTCATCTCTACTGAAGTGCTGAACACCACTGATCCTCACAACAACCCAAACACACATCTCTCACACGCTCTTCAGAAGATCTTCTACATGACGGAGAAAAGAGCCTCACCTCGATCTCGAACTCATTGTGAAGCTGACACAGAGTCAACCACAGGATCTTAAACCTGCAACAGAGCAGAGTTATCCCTCCTTGAATATATTCTGCACTACAGCTATGAGAGCCCAAAGAAAAGCACTCACGCTCCGGGGCCCTGCCACGTCCACGTGATCGTGTCCTGCAACGAGaagcacaacacaaacacacaccgctGACTGATCGTTACTTAAAGATGCAGGCTTCGTGAGATCGGGCTGATCTGAGTTTAGATGTCTCACCAGTTTGTTTGGGTAACGGATCACGACAGGCTGGACAGGAACCGCAGGGATGAACGCTCctggatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacttctgaatGTAGGGATGCTCATTAGGCAGAAAGAGCACAGTTCAGTGATGATGTTCTTTggtaaagtaaatgttttttggtgCTGTTCATTTTTTGCAGCTGCTGTTTAAATACCAGGAAAGTAAGCATTAAATTAGTGCTGTGTTTCTATTAAATTGTTATCCTAAATACAAATTCATACTAAAACATGGATGGTTCACTTTCTGGAAATTAAACAAAGtacataatgaaataaatcagcACAATATCACATAATGTATtatccaacacacacacaccacacacacacctggttTGAATGTGATCAGGCAGGTTCTATTGGTGCACGTCCCTTCTGGAAAAATCATTATCTGAAAAGAGTTTttttcgtttagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252833.1 lncRNA downstream 393059 6685500 ~ 6688903 (-) True LOC122360716
TU162877 lncRNA downstream 801671 6280028 ~ 6280291 (-) False LOC122359836
TU162914 lncRNA downstream 873294 6139394 ~ 6208668 (-) True G110227
TU162910 lncRNA downstream 874157 6137107 ~ 6207805 (-) True G110224
TU162909 lncRNA downstream 878073 6201389 ~ 6203889 (-) True G110223
TU163020 lncRNA upstream 6202 7089726 ~ 7091063 (-) True G110307
TU163030 lncRNA upstream 111014 7194538 ~ 7195316 (-) True G110315
XR_006252790.1 lncRNA upstream 210658 7294182 ~ 7296238 (-) True LOC122360226
TU163114 lncRNA upstream 247624 7331148 ~ 7385396 (-) False LOC122360224
TU163119 lncRNA upstream 247624 7331148 ~ 7385396 (-) False LOC122360224
XM_043261656.1 mRNA downstream 391736 6650949 ~ 6690226 (-) True LOC122360792
XM_043260113.1 mRNA downstream 515773 6561850 ~ 6566189 (-) False irx1a
XM_043260112.1 mRNA downstream 515783 6561850 ~ 6566179 (-) True irx1a
XM_043260027.1 mRNA downstream 742466 6279709 ~ 6339496 (-) True LOC122359836
XM_043260029.1 mRNA downstream 802385 6263504 ~ 6279577 (-) False rprd2b
XM_043260643.1 mRNA upstream 113567 7197091 ~ 7201319 (-) False LOC122360222
XM_043260642.1 mRNA upstream 305192 7388716 ~ 7392318 (-) True sox4b
XM_043261055.1 mRNA upstream 358374 7441898 ~ 7618596 (-) True cdkal1
XM_043261494.1 mRNA upstream 744691 7828215 ~ 7830750 (-) True LOC122360680
XM_043260903.1 mRNA upstream 845005 7928529 ~ 7951085 (-) False cables1
TU162893 other downstream 982035 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 1047185 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 1133173 5944221 ~ 5948789 (-) False LOC122359839
TU162692 other downstream 1263600 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 1722283 5359510 ~ 5359679 (-) True LOC122361376
TU163032 other upstream 111966 7195490 ~ 7201381 (-) True LOC122360222
TU163145 other upstream 527105 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 527310 7610834 ~ 7618585 (-) False cdkal1
TU163187 other upstream 745296 7828820 ~ 7830717 (-) False LOC122360680
TU163302 other upstream 1007127 8090651 ~ 8092353 (-) False mkxb

Expression Profile