RNA id: XR_006252784.1


Basic Information

Item Value
RNA id XR_006252784.1
length 2355
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id LOC122360224
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7331148 ~ 7386350 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAATGAATTATTGATTGTTTATTGATATAGTGTGAATAATATGCGACCATCAATGAAATATTATAGTGTGATTAAAGGagtttaaaaagtcatttactCTAATTACAGCTAGTTAGTCCTGTAATCTTCTGAGGAGATCAGATCCTCGCTGGATGAGTTGAGAATGACATGAAACTACATCTGCTGATCTTTAGTACACTATTATTGATCTGTTCACTACACAccagcacacacaaacaatgtatgtatatatatattcattaacgTACACTGAAAAAGCCTACTTTTTAAGGTAAGTGGATGCTGGTAAGTTATTTTAGCTATATGTGAACTCATTTAGTTGATTTACTTTCCCcaagatttgtttatttaaatgtgaccCGAATAAATTGActgcaaccacttaccttaGGAAATAATGTCGTTTTTCACTGTGCACTGTCGCATTAAATCGTAAAATATCAGAACTTATAAACGCTGAAGGTGAATGCATATCGAAACGcgttttatttacttgttttatttcgCGCCGGATGCCGATCGCTGTTGCTATGGTAACGTGGCCAGGCCGCACTGAGCTCAAGTCCCTCTGAACGTCTTACCTGATACACGCAGGCTTTATATTGAGTAAAGTGACCCCTAAGATTGAGTTCTGATCTGGAAACATCCGTCGTGAAGTTCAAGCGCGTGCTCGTGGGGCGTGTCAACGCAACTTATTCAAGTGTCTGCAGCTCCTTCCTAATACTTCACGTTGTGCTCGAATGCATTCACATCACACACTGcagatgtgtatttttaaaagttcaatgTTCGGGTGAAATATCAGAAAAGCAGAGAATCCTTTAATGGCACAAACCCTTGGAGATGTAAAGAACGCGCTCCAGTAAGTTGCTCTCTTTGTTGTTATTTAGTTGTATGTAGAGGGCGGGACTCGAACTGAAATGAACAAGGCGCGGCCAAGAACCCCCTTCACACGTGTAGACAAAGGGACCATCAACACGACCCAAACACGCAGAGGAAAAGTTTTCCCGCGCGCTTCCTCGCGCCCGGACCTCGCGAGGATCTCAGGTGAGCTTTCGGCACGCGCTCAGGTTGAAGTCGCCTCGCGCTCGAATCCGTTTCGCCGCGAATTCCGTCTCAAAAAGTTCTCGAAGAGTTTGCGCGTCAGCTCTCAAAGTTGAGCACAAAGCAGAGGAGCGGTCCTTTGTTCAGCGCGACTCGAGATGCTCGAACTAGAGATGAAGATGAACTAGGAAGAAAGTGGACGGCGAACACCACAGGATGCATTTCGGAGAAACTAAAAACCGCAGACTTATTTTCCACTTTTGGCTCACGAGGGACCGAGGATGACGCAGGAAGACAAAGCTGTCAAAAGTTGATCGGAGAAGGAAGTTGACCGAAAATTACGACCGACAAGTCTTTTACAATTAATCCTAAACGAAAGACGAGTTTGTTTGAGCAGAAGCTCCGGGCATCGATCTGTTTAATCTTCCGGAGGATGTAGCCTTGATGAATGAACACAAACTGAAGAATTCAGCAGACTCCTGCTTTTAAAGCCGTGTTTTTGCTGCTCGGTGGACGAATACTGATGAGACTGTGTGAAGAGCAACAGGTTCGTCGAGCAGCCCTTTGTTACAGAACTTAGAAAGGCACGATggagtttctttgttctgcagaCCGTGAGGAACCTCCACACACACGATCTCCTAGAAGACCTCATACCCCGGAGGATCCAgctgactttttaaaaagtttgctAAGAAAAGACCAAAAAATGTACGAATTCATCATATGAGGCCAGCAGACACAGGACCTCCAGGACCGGGGGACTTCTGTTTTTAAGGACGCCCTTTGAAGGATTTATTTAACTGATATTTTCTTTGTGGAATATGATTACTTTCCTTCGGGATTATTGGACTGTTCCTGTTCATCGTCTAGTCGCGGCGGACAAAACAAAGAACGGGATCTTCTGAGGAGCAGGATGATTCGCTCATTTTCTCACGTCCCACGCTCGGAGCTGATCCAGGACCAGCCGGCGCAGACCCAGCGGAGACGTCTGAGAGCGTGAAGCTGAGCTCGGATCAGCAGCAGACGCAGAGAACCCAGCCTCTTCCTCaggaggaagtgtgtgtgtgtgtgtgtggcacgGCCGGATGTTTGCAGcgctcagacacacacctgcagcGGCGTGGATGCTGCTGGTTCAGGTGGTCTGCTGCTCGGTTCACCTCACGCTCTTCACCAGATAAACTGATGACCCTGGCAGTTCTTCAGGAGCTCTGTTTTTTGAACCAGctcgtatccagatcagatggtggatcagcacccagagatgaccttcatcagaaaccaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252790.1 lncRNA downstream 35288 7294182 ~ 7296238 (-) True LOC122360226
TU163030 lncRNA downstream 136210 7194538 ~ 7195316 (-) True G110315
TU163020 lncRNA downstream 240463 7089726 ~ 7091063 (-) True G110307
XR_006252833.1 lncRNA downstream 642623 6685500 ~ 6688903 (-) True LOC122360716
TU162877 lncRNA downstream 1051235 6280028 ~ 6280291 (-) False LOC122359836
TU163138 lncRNA upstream 6716 7393066 ~ 7393325 (-) True G110405
TU163132 lncRNA upstream 11708 7398058 ~ 7405996 (-) True G110399
TU163172 lncRNA upstream 379537 7765887 ~ 7766257 (-) True G110429
TU163180 lncRNA upstream 406457 7792807 ~ 7793387 (-) True G110437
TU163199 lncRNA upstream 463329 7849679 ~ 7904593 (-) True G110449
XM_043260643.1 mRNA downstream 130207 7197091 ~ 7201319 (-) False LOC122360222
XM_043261656.1 mRNA downstream 641300 6650949 ~ 6690226 (-) True LOC122360792
XM_043260113.1 mRNA downstream 765337 6561850 ~ 6566189 (-) False irx1a
XM_043260112.1 mRNA downstream 765347 6561850 ~ 6566179 (-) True irx1a
XM_043260027.1 mRNA downstream 992030 6279709 ~ 6339496 (-) True LOC122359836
XM_043260642.1 mRNA upstream 2366 7388716 ~ 7392318 (-) True sox4b
XM_043261055.1 mRNA upstream 55548 7441898 ~ 7618596 (-) True cdkal1
XM_043261494.1 mRNA upstream 441865 7828215 ~ 7830750 (-) True LOC122360680
XM_043260903.1 mRNA upstream 542179 7928529 ~ 7951085 (-) False cables1
XM_043260901.1 mRNA upstream 542179 7928529 ~ 7951084 (-) True cables1
TU163032 other downstream 130145 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 248002 7081962 ~ 7083524 (-) True G110303
TU162893 other downstream 1231599 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 1296749 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 1382737 5944221 ~ 5948789 (-) False LOC122359839
TU163145 other upstream 224279 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 224484 7610834 ~ 7618585 (-) False cdkal1
TU163187 other upstream 442470 7828820 ~ 7830717 (-) False LOC122360680
TU163302 other upstream 704301 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 829679 8216029 ~ 8216595 (-) True G110544

Expression Profile