RNA id: TU163132


Basic Information

Item Value
RNA id TU163132
length 7915
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G110399
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7398058 ~ 7405996 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTACGAACTTTTAAAAGGGTCTAGAGGTGAGGACgcaacatttataattaatgctGGGACggagttttaaaaatgaccaggCACAACGACAGAGTCAGGTTTAGAGGTTTATTATACGACACTGATAAGGAGTGTGAACTATTTACAAAGTGtgtaaaggggaactaagagaGGCaccaaagtaaagaaataaatataacaaaaccccAAACTAAGTTGCCCAAAATCCTTGTAAACTAGCCAAagaaaaatgtggaaaacaaaCCGAAATCTTCAGCGCGTGCGGCGCCGTAACTAACCTACTCTCACTaggacgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggtacaaagggCGCTCACTCCTTACCTGATGTGTCTAACATGGAACAGCTACGTGCGAAATGTACGTCGTACGACCTAACCCTGTTCTCTTTTCCCCAAGAGAAAGGACAGTTAATTCTAGGCAACAATGTCAGGCAAGATGCTGGATCTGAACGAGTTAGACACATTAGCACACACtggaaaactgaaacaaatcaaCTATGTCACGAAACACCTGCGTACACACTGAACAATGAGCTCTGAGCTACCGAACGTAACAAGCGGCGCGCTTTTTAAACTGCTGGAAGACGTCGGGTTGGCTGCACCGGCGACTCCGGGACGATGATGGACAGCCGCATCCTCCAATCAGCAAGCGCGTACCTGAGAGAACGAAAGAGACAGCTCTCGgggaaaacagacaaaaagacCACGCAAAcaaccagaacacacacacagcacgtAACACCCCCTCCCATAAGAACAAACTATATGAAGTTTCACAATTACCCACCAGAAGTATTACACTCTAGATAGGTGCGAAGAACGTGATCGCTGATGCCCTATCTAGTGTTTAATCGTTAGATTATAGCTCTGCACAATCAGAGACCAACACATTAATCTTTGGTTCTGGTTATACATACGTGATAGAAATACCAGAGGATTGTGATCCGTAAATACATTTACTGGGCGGTTGCTTGATCCAACATAAACATCGAAATACTGGAGGGCCAGAAGTAACGCTAACGCCTCTCTCGATTGTCGAGTAGTTCaactgatgtttattaaattttcgCGAAAAATAACAGGATGATCAACTCCATCCTTATCTTCTTGCAACAGCACGGCGCCCGACCCACCGCACTGGCATCCAGCTCCAGCTTAAAATCTGACTCGAAATCGGGTGCACTTAAAACAGGAGTGTTACACAGTAGTGCTTTAATAGATTCAAACGAGTGTTGGCATTCATCAGACCACTGAAACCGACAAGAGGGACTGAGAAGTGACATCAATGGTTGTGCAACGATAGAAAAATTTTTACAGAAGCTGCGATAACCAGCCATGCCTAAAAATCTACTTAGTTCGCGTCGTGTAGCTGGAATTGGGAATTCAGCAATGGCGGTACTTTTGCTTCTAACGGGCGCACTTGACCTTGCCCAACTTGTTTTCCCAAGTATGTGATAGCTGCCTGGCCGAAATCACACTTGACCAAGTTCAAGGTTAAAGAAGCGTTAGAAAGACGCTCAAACTGTTCGCAGCAGAGATATGTGTTCAGGCCATTCCGCAGAATAGACCACTAAATCGTCTAAATATGCATTGCAGTTCAGAACTCCAGAAAGCACAAGGTTGACGAGCCGCTGAAAAGAAAACGATCGGGTGTCACAAACGCGGAAATATCAGAAGTACGCGGTAGCAAAAAACAGTCTGGAATGGTAACTGCGTTCACCTTTCTATAGTCCGTACAGAAGCGCGCCGTGCCGTCACTCTTTGGAACTAGCAGGCAGGTCCAGGGACTGCAGCTAGGCTTAGCAAGCCCATGCTCAAGCAGATACTCAGCGTCACTTCGCATAACAGCACGCTTCGTGACATTCACCCGATATGCATGTTGTTTGATTGGCACGGCTTCACCCACATCAATGTCGTGCTGCAAGAAGGAACATCAttaaacaaagaagaaaaagcatTAATCAAATTCATAATATCAGCTCTCTGTTGAGCGGACAAGTGCAACAGATGAGAGGATAGTTCGCTTATCTCAGGATTCTTAAGTCTAACGCAGGTCTGGTGCATATGATGGGATACCACACCATCATCCTCAACATCACAAGCAGCACCGACACTACAGCAGGCCGTAACTACGGGAACGGGAGCGACAGCAACAACCGGGCGTGAATCTTCTCGAATATAATACCCTTTTAGCATATTCACATGACACACgcgagattttctttttctgtcaggAGTACTGACCACATAATCTGTATCGCTCAGCTTTTTTAAAACCTCGTACGGACCAGAAAAACGTGCGGACAGAGCAGAACCAACCACGGGAAGTAACAAGTACTTGATCGCCTTTCTGAAAACAGCGCTTAACTGATTTGCGATCAAACTGGGTTTTCATTTACTTTAGCGTTTTCTAATGACTCTCTCGCCGCAGAACATGCTTGATGTAATCGTTCGCGAAATTTACTCACGTAGTCCAGTACGTTCACTTTAGGGCTGGAATCAAgggataaaatattttctttgcgcATTTTTAAAGGACCTCTGACACGATGCCCGAACACTAGTTCGGCAGGACTACATCCTAAGCTCTCACTGTGAACAGAACCAGCGGCACCCCCTCGACCCACTCCTTACCTGAATCCAAGCACTACTTTCTCAGCATAGTTTTTAACGTCTGGTGAAAGCGTTCGAGCACCCCTTGGCTTTCCGGATGATAGGCGCTCGCGAATCTGTGAGTGATATTTAGAGAAGACAAAACTTGTGAAAAGAGTTTAGAAAGAAAATTAGTGCCTTCATCGGTTTGCACAATTTTGGGTAACCCGAAAGTAGAAAAGAACTTCACAAGcgctttaataaaaatcacagacgCGATGATTCGTCTCAACGGAATCGCTTCAGGAAAGCGCGTAGCACTACACATCATTGTTAACAGAAACCGATTAGCACTTTTGGTTTTAGGTAGTGGCCCAACACAACCCACAATGACATGCTCGAATGGTTCGCCTACTAAAGGAACTAGTGGCGCAGGAGGAACTATCTGGTTCGGTTTGCCTGTTATCTGACAGGTGCGACAGAATTGAACAACGTCAGTTTTCTAACGAGGCCAaaagaaatgcatcaaaacacGATTATAGGTCTTGATTCCTAAATGAGCCGATAGATCATGGTCATGAGCTAAAGACAAAACGTGATGACGATAACACGAAGGTACAACAATTTGATACACGACACTCCATTCAAAGTTTTCCTTAATTTCTGGGCACCATTTACGCattagtaaattattttctataaaataagcAGACTTTCTCCGCTGTGCTTCCTCCAAGGAGACAACAGCAGAGAAACACTTGCACAAAGTCGGGTCTAATGCTTGTGCGGAAACTACTTTCTCACGCGTCATGGGCAGTTTCACATTCCTCGAATTATCAGATTTTTCAGCAGGCAACACCAAAACACCCAGTTCCACTAACTGTTGCAAAACAGCACTTTTTATATCTCTTAAGCTGTTGTTTCGTAACCGCGATTTTAAAGTGGGCAGCGATACACAATAAATCGTCTTTCTGACATTTATCAATTAACTTAAGAAAAGTCTCCAAAGCAAATTCAGCCATAATTACGCCGAAACGCACGTTACCCAATTAACCAGTCACGCCGAAATTACCATATAAAAccgatttacaaaaaaaaaaaaacaaaaaaaaaaaaaaacacaaacccatGGTCACTCCACAATCCACGCCAGCAATAATTAATTACGACGGGAGATAATTTCTTACTTACctatcccggacgagcccccattAAGTGTTACGAACTTTTAAAAGGGTCTAGAGGTGAGGACgcaacacttaaaataaatgctggggcggagttttaaaaatgaccaggCACAACGACAGAGTCAGGTTTAGAGGTTTATTATACGACACTGATAAGGAGTGTGAACTATTTACAAAGTGtgtaaagggggaaaaaaataaatataacaaaaccccAAACTAAGTTGCCCAATATCCCTGTAAACTAGCCAAagaaaaatgtggaaaacaaaCCGAAATCTTCAGCGCGTGCGGCGCCGTAACTAACCTACTCTCACTAGGacgagaaacaaaaaaaggtacaaaaagggCGCTCACTCCTTACCTGATGTGTCTAACATGGAACAGCTACGTGCGAAATGTATGTCGTACGACCTAACCCTGTTCTCTTTTCCCCAAGAGAAAGGACAGTTAATTCTAGGCAACAATGTCAGGCAAGATGCTGGATCTGAACGAGTTAGACACATTAGCACACACtggaaaactgaaacaaatcaaCTATGTCACGAAACACCTGCGTACACACTGAACAATGAGCTCTGAGCTACCGAACGTAACAAGCGGCGCGCTTTTTAAACTGCTGGAAGACGTCGGGTTGGCTGCACCGGCGACTCCGGGACGATGATGGACAGCCGCATCCTCCAATCAGCAAGCGCGTACCTGAGAGAACGAAAGAGACAGCTCTCGgggaaaacagacaaaaagacCACGCAAAcaaccagaacacacacacagcacgtAACACAGAGCCTTTCAGACAGAAGTTATATACATTTCTCTATAATTATTAGTCTCTAGAAGTGATTGGCTAAAACCTGTTTCAGCTTCTTAGTCTATCTTTTATAATCAGCTGAAGAGCTTTTATTTCCccagttgtttttaaatattgagtTTTCATTGTGAAGGAAGCACAACCTTcatttgtatgtttgtatagTCAAAATAAGATCTGAGTTTAACAGACTGTCAGACGCTCTTAAAAAGCCCTGCtatgattctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacagacagagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctctgctTCAGTTCTTAGCATATTCATCCTCTTTCTCCGACAGACTTTGAAAaggatattttacatttgaaaatgtaaatgggTGAAACTGGTCTTTCACTTACAAATTACCTTTCCTTGGATTCGCTTCATAATGAACAGCTATTTATAAGGAAATATTAATCACTGCCAGGGTGAGAAGGAGCAAAAGCCATTATTTTTCACTCCGGCGAGGCTCGTTCATGGACTCTCGGCGGGTGTTTAATGAGAGAAGCTCAGGGCGTTGAAAGACGGATCGCAGGGTGTTCCTTTTCTCACCTCCTCCGGTCCTGCTCGACTTTCACTGTGAACCCGACTCAGACAGAGACCTTGAGAAGTCTCCCGGCCAGGACACCATCTGAGCAACAAGCAGCCGTCCAATTAAAAGCCATGGAGGGATGTTCTGCTCGGCTCTGAGGCAGGACTTCATCTTCTTCACACACTGCTTCCACGCACAGATAAAGACATTTGTAGACCTAATTCAGCGTGTCTGTTCTCACTGGATGATAAAAGTGccacaaaatttttttaacagattttaatcAAACTTAGTGGAGATCTGTACGCTTACTCCATTTAAATGTACCAGAGACAATAATTTCAACATTAAAGTATCTGTTCATCTACTTGATGTTTCGTGCCGCTGAAACTATGATTGATTGAAACCATTAAGATCAAGAAACAGTAAACTTAAAGGTAAAgttaaccacacacacacacacacacacagaaagaaaaatatacacacacacacacacacacaaatgacatACCCACGCACattcactcgcacacacacacacagacacacacacataaagaaagaaaaatacacacacacacacacacacacataaagaaagaaacacacacacacacacacacacacaaataacataCCCACGCACattcactcgcacacacacacacattaaaaatgaaaaaaatacacacacacacacagaatgaaagaaaaatacacacacacacacacaaagaaagaaaataatacacacacacacacacacacacagaatgaaagaaaaatacacacacacacacacacgcacaaacacacacacacacacacacacaaagaaagaaaaatacacacacacacacaaagaaagaaaaatacacacacacttgcacacagagagagagagaaacacacacacacacacacacacacacacacacacacacacacacaaagtgatGGATCAGATGGAGGAGGGTTCCTGTGGAAATGATATCTTCAGGGTCCTCCAGCTGATTAGTTCATAAAACATGAGATTTCTTCATGTGTCCTGAAGCAGGTTATAgtttataaatacatcaaaGCTTACAGTAAATGGATGGGAAGATGGTCGTTACACAttaggtgacgtgtgtgtgtttaagttaCTTAAAGTGAAAAGAACGTCTAAAGTGGATCATCAGATTGAACAAAATCTCACTTGCGGTCTTTTAGCCTGAATGAAGGAGCTCGCGTGCAGAAATGTTTTCTTCCGCTCCACTCCTCGGTTGTTACTGTAATGTCTGCTTTAACAGCTGAGACGAAGCTGGGACGTGAGAGATGTTTCAGACGCTGCTGGATGATGAACGAGAACCTGATGAATCATCACGCTGCCGTCTGTCACGTCTTTCCTGCCATCTTTCACAAGACTTCCCCAATGTGTTAAAACAGAAAGAAGCAGGCAGCGGAGCATCATGAAACCCAAGGCAGACATTGATTCATCAGCACCCGGTGATCGAACTAAAAACCTGACATTCAACATcacaattacatttgttttctctAAATGTCACACGAACCCTTTCCACCAGTGGAGCAGTTTAATTCTTACATAGAGACATCTTCATTCACTGTACGGGCCGTGATGGACGCTCGTTGTGTGCTGCCATGATCAACGTTTTACTGAAATGTCAAAGATTTCTATGAATCTGAGAAGAGGACTGAGAGACGGAAATCATCACATAGTGGCCTTATATTTCATGCAAACACAGATATGTGTCTCCGGAGCAGAAATAGACCACAATACATTATATGAGATTCGTGCCAACAATCATTAGGCGATTAAGTAAAGATATTACTTAAAACACAGtcaaatattaagatattttgtaaatatgctACACTAATCAAACATTAAGTTCTGAAATAtttagtgatatgcattgctaatttTCTTGATATTTAGATATGTTTTGCACCAGATCTGTTGTGTTTCAGCCAAATAACAAaccaatggaaagcttattcattCGTCTTTCTGATGATCTTAATATCGAAAATGATCCCCTATGATTGGTTTTAAGCTCCTGGGTCAGGTATCTGTTCACATATCACGTGATTCGTTTGCCTGCATGAAGCTATGCTTGACATTTATGAAGTCATTTCTGCACCAAAGAAAATCATCGCAAGCTTTCGTGAAAAACATGACATAAAGTGCGTTGTTGTGTTGAGCTCCTCAGGATCAAAATACAGATCAACTCGCCGTCATAGCCCTACTTTTTATGAGAACTGATAATGTCTTATTCGTAGCGAGAAAGCATTTAAACGTAATACACTTCAGCTTGAACGTAATCACAGAAATTAGAGAAAGATGCCataacaccacacacacacacacactcacacacacacactcacacacacacacagacacacacacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacactcacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163138 lncRNA downstream 4733 7393066 ~ 7393325 (-) True G110405
XR_006252784.1 lncRNA downstream 11708 7331526 ~ 7386350 (-) False LOC122360224
XR_006252788.1 lncRNA downstream 11710 7331530 ~ 7386348 (-) False LOC122360224
XR_006252786.1 lncRNA downstream 11710 7334413 ~ 7386348 (-) False LOC122360224
XR_006252787.1 lncRNA downstream 11722 7336405 ~ 7386336 (-) False LOC122360224
TU163172 lncRNA upstream 359891 7765887 ~ 7766257 (-) True G110429
TU163180 lncRNA upstream 386811 7792807 ~ 7793387 (-) True G110437
TU163199 lncRNA upstream 443683 7849679 ~ 7904593 (-) True G110449
TU163204 lncRNA upstream 477936 7883932 ~ 7901008 (-) True G110452
TU163206 lncRNA upstream 481799 7887795 ~ 7889295 (-) True G110453
XM_043260642.1 mRNA downstream 5740 7388716 ~ 7392318 (-) True sox4b
XM_043260643.1 mRNA downstream 196739 7197091 ~ 7201319 (-) False LOC122360222
XM_043261656.1 mRNA downstream 707832 6650949 ~ 6690226 (-) True LOC122360792
XM_043260113.1 mRNA downstream 831869 6561850 ~ 6566189 (-) False irx1a
XM_043261055.1 mRNA upstream 35902 7441898 ~ 7618596 (-) True cdkal1
XM_043261494.1 mRNA upstream 422219 7828215 ~ 7830750 (-) True LOC122360680
XM_043260903.1 mRNA upstream 522533 7928529 ~ 7951085 (-) False cables1
XM_043260901.1 mRNA upstream 522533 7928529 ~ 7951084 (-) True cables1
XM_043261491.1 mRNA upstream 571633 7977629 ~ 7984289 (-) False gata6
TU163032 other downstream 196677 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 314534 7081962 ~ 7083524 (-) True G110303
TU162893 other downstream 1298131 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 1363281 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 1449269 5944221 ~ 5948789 (-) False LOC122359839
TU163145 other upstream 204633 7610629 ~ 7618585 (-) False cdkal1
TU163147 other upstream 204838 7610834 ~ 7618585 (-) False cdkal1
TU163187 other upstream 422824 7828820 ~ 7830717 (-) False LOC122360680
TU163302 other upstream 684655 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 810033 8216029 ~ 8216595 (-) True G110544

Expression Profile