RNA id: TU163145



Basic Information


Item Value
RNA id TU163145
length 928
RNA type TUCP
GC content 0.48
exon number 4
gene id cdkal1
representative False

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7441898 ~ 7618596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGGAGACGTTCCAACATGGTGTTCTGAGAGCAAAACAACGTGAACGAAACCGTTTGAAGAGAAGAAGAGCTCGCCTTTTCTCCCTCAAACTCCAGCGGTTTTTTCAGCGGTTTTTTGGCACGATTATATTTTTCGTCTCTCGATCATGCCGTCTGCTTGTGACTCTCTGGTCGATGATATCGAGGACATGGTGACTTCTCAGGACCCCACTCCTTATGAGCGGCAGTTTGCCCGGAGAAACATTGTGCCTCGTCCTCGCAAACACAAGCCTCAGTCTGCAGGAGAAGAGCTTCAGACAGACAGtgtGATTCCTGGCACACAGAAGATCTGGGTGAAGACGTGGGGCTGCTCACACAACAGCTCTGATGGAGAGTATATGGCTGGACAGCTGGCAGCCAGTGGATATAAGATCACAGTGTTTCTCGTCAACCAATGACGGCATGACGTTCCAGACGCCTCCGCTCACAGATTCAGAGCTGACCGAGTCCTGGACGCCAGACAGATGTAGAGAGGACCGAGGGACCTGAATGTACTTGACCAGTGTTTGTGAAGCGCTGCACAGATCAGACAGTCTTCCAGAAGAGAAGATGTGAGGAGTTCTCTGTTCAGACTGGACCGAGGGACCGTCGGGAAGCTGCTCCGCTCCGTGTCTCCTACAGATGTGTTGAGTGGACTGTAAATGTCGCTTTGCCTTTCACTCTGTGTTTGGTTTTATTCCCAGCTGATAAACTTTTCAATAAAGCATTGACAGGCTTTTAAATAGGGACGCGCTATAATGGATTCATGAATTAATTTGAGAGATGAGTGTACTTGTGAAGGTTTTGGGAAAAGTCAGTCAGTGACGTTGTCTTCATACGGTCTTCAGTTATCTAGAGGATTATTTGTGGATTTAATTCTTGTTGATGACTGCATTGCTGCGTGGGAGGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU163132 lncRNA downstream 204633 7398058 ~ 7405996 (-) True G110399
TU163138 lncRNA downstream 217304 7393066 ~ 7393325 (-) True G110405
XR_006252784.1 lncRNA downstream 224279 7331526 ~ 7386350 (-) False LOC122360224
XR_006252788.1 lncRNA downstream 224281 7331530 ~ 7386348 (-) False LOC122360224
XR_006252786.1 lncRNA downstream 224281 7334413 ~ 7386348 (-) False LOC122360224
TU163172 lncRNA upstream 147302 7765887 ~ 7766257 (-) True G110429
TU163180 lncRNA upstream 174222 7792807 ~ 7793387 (-) True G110437
TU163199 lncRNA upstream 231094 7849679 ~ 7904593 (-) True G110449
TU163204 lncRNA upstream 265347 7883932 ~ 7901008 (-) True G110452
TU163206 lncRNA upstream 269210 7887795 ~ 7889295 (-) True G110453
XM_043260642.1 mRNA downstream 218311 7388716 ~ 7392318 (-) True sox4b
XM_043260643.1 mRNA downstream 409310 7197091 ~ 7201319 (-) False LOC122360222
XM_043261656.1 mRNA downstream 920403 6650949 ~ 6690226 (-) True LOC122360792
XM_043260113.1 mRNA downstream 1044440 6561850 ~ 6566189 (-) False irx1a
XM_043260112.1 mRNA downstream 1044450 6561850 ~ 6566179 (-) True irx1a
XM_043261494.1 mRNA upstream 209630 7828215 ~ 7830750 (-) True LOC122360680
XM_043260903.1 mRNA upstream 309944 7928529 ~ 7951085 (-) False cables1
XM_043260901.1 mRNA upstream 309944 7928529 ~ 7951084 (-) True cables1
XM_043261491.1 mRNA upstream 359044 7977629 ~ 7984289 (-) False gata6
XM_043261489.1 mRNA upstream 359044 7977629 ~ 7984289 (-) False gata6
TU163032 other downstream 409248 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 527105 7081962 ~ 7083524 (-) True G110303
TU162893 other downstream 1510702 6096675 ~ 6099927 (-) True G110215
TU162885 other downstream 1575852 6029208 ~ 6034777 (-) True G110208
TU162864 other downstream 1661840 5944221 ~ 5948789 (-) False LOC122359839
TU163187 other upstream 210235 7828820 ~ 7830717 (-) False LOC122360680
TU163302 other upstream 472066 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 597444 8216029 ~ 8216595 (-) True G110544
TU163340 other upstream 680204 8298789 ~ 8302245 (-) True G110554
TU163343 other upstream 693680 8312265 ~ 8316685 (-) True G110556

Expression Profile