RNA id: TU163172


Basic Information

Item Value
RNA id TU163172
length 371
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G110429
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7765887 ~ 7766257 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTAACATACAAATCAATCATTGGGTATTTAATGAATGGGCCTACATGCCTAGAAACAGGCATAAGGAAGGATTACTTGGTAGTTTATTAAAGGACATTCGTCACCAGTTTTCCTGTTGGAGCCTACAGTTCAGCTATCTTAAAGAACAAAGATGATGGATCCTCACTAGATATTTATATGAACTAAACAGCTTTATGGTATTATTAAGTTTTTCAGATAAAGGTCTTAAAAGTTCATGATATTTGTACTGAATTCCTTCTCATTTACCTGGGTTACTATTTAAGAATAAACCACAAAGTTAAGATCGAAGTGCATTGTGGGCAGAAGCTTAAACTTTTGTGTTAATAGTTATGCCATCATTAATAATAC

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163132 lncRNA downstream 359891 7398058 ~ 7405996 (-) True G110399
TU163138 lncRNA downstream 372562 7393066 ~ 7393325 (-) True G110405
XR_006252787.1 lncRNA downstream 379551 7336405 ~ 7386336 (-) False LOC122360224
TU163180 lncRNA upstream 26550 7792807 ~ 7793387 (-) True G110437
TU163199 lncRNA upstream 83422 7849679 ~ 7904593 (-) True G110449
TU163204 lncRNA upstream 117675 7883932 ~ 7901008 (-) True G110452
TU163206 lncRNA upstream 121538 7887795 ~ 7889295 (-) True G110453
XR_006252846.1 lncRNA upstream 192624 7958881 ~ 7960375 (-) True LOC122360975
XM_043261055.1 mRNA downstream 147291 7441898 ~ 7618596 (-) True cdkal1
XM_043260642.1 mRNA downstream 373569 7388716 ~ 7392318 (-) True sox4b
XM_043260643.1 mRNA downstream 564568 7197091 ~ 7201319 (-) False LOC122360222
XM_043261656.1 mRNA downstream 1075661 6650949 ~ 6690226 (-) True LOC122360792
XM_043260113.1 mRNA downstream 1199698 6561850 ~ 6566189 (-) False irx1a
XM_043261494.1 mRNA upstream 61958 7828215 ~ 7830750 (-) True LOC122360680
XM_043260903.1 mRNA upstream 162272 7928529 ~ 7951085 (-) False cables1
XM_043260901.1 mRNA upstream 162272 7928529 ~ 7951084 (-) True cables1
XM_043261491.1 mRNA upstream 211372 7977629 ~ 7984289 (-) False gata6
XM_043261489.1 mRNA upstream 211372 7977629 ~ 7984289 (-) False gata6
TU163145 other downstream 147302 7610629 ~ 7618585 (-) False cdkal1
TU163147 other downstream 147302 7610834 ~ 7618585 (-) False cdkal1
TU163032 other downstream 564506 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 682363 7081962 ~ 7083524 (-) True G110303
TU162893 other downstream 1665960 6096675 ~ 6099927 (-) True G110215
TU163187 other upstream 62563 7828820 ~ 7830717 (-) False LOC122360680
TU163302 other upstream 324394 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 449772 8216029 ~ 8216595 (-) True G110544
TU163340 other upstream 532532 8298789 ~ 8302245 (-) True G110554
TU163343 other upstream 546008 8312265 ~ 8316685 (-) True G110556

Expression Profile