RNA id: TU163180


Basic Information

Item Value
RNA id TU163180
length 581
lncRNA type inter_gene
GC content 0.66
exon number 1
gene id G110437
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7792807 ~ 7793387 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcccagactccacctcggcttgtagacccgccggcttcccttaggctcctagctccctcctctctaccgtgctccgtcattccaccagcttcaccaggctccatcgtctctccggctacgccttggtcggtcgtcgaccatccgtcgcctcaggattccactcctccagcttcgcctcgtccctccatccctccggctctgtcaggctcctcccttcccccggctccacctcagtcctctgtcgctctggctccgccgcgtccttctcgtcccccgtctccgcatcagtcgccgaagtctgcggtatcgcctaggacctccagcgccgctgtgtcgccctggctcttcggctctccgcctccgcctccgcctcagtctccccgaccacctgctccgccgccgtcggtcggctccatggggttgatgaccgttacctctccatggctcctccctccgtcggctccaccactgaccatcatggctgggctctggatcgcctcccgccccagactcctcccgtcttcaccctggctcctcccaccgtctcttcctccctggtctcagtgtgctgactccctccc

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0072359 circulatory system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163172 lncRNA downstream 26550 7765887 ~ 7766257 (-) True G110429
TU163132 lncRNA downstream 386811 7398058 ~ 7405996 (-) True G110399
TU163138 lncRNA downstream 399482 7393066 ~ 7393325 (-) True G110405
XR_006252785.1 lncRNA downstream 406471 7336405 ~ 7386336 (-) False LOC122360224
TU163199 lncRNA upstream 56292 7849679 ~ 7904593 (-) True G110449
TU163204 lncRNA upstream 90545 7883932 ~ 7901008 (-) True G110452
TU163206 lncRNA upstream 94408 7887795 ~ 7889295 (-) True G110453
XR_006252846.1 lncRNA upstream 165494 7958881 ~ 7960375 (-) True LOC122360975
TU163265 lncRNA upstream 165904 7959291 ~ 7960038 (-) False LOC122360975
XM_043261055.1 mRNA downstream 174211 7441898 ~ 7618596 (-) True cdkal1
XM_043260642.1 mRNA downstream 400489 7388716 ~ 7392318 (-) True sox4b
XM_043260643.1 mRNA downstream 591488 7197091 ~ 7201319 (-) False LOC122360222
XM_043261656.1 mRNA downstream 1102581 6650949 ~ 6690226 (-) True LOC122360792
XM_043260112.1 mRNA downstream 1226628 6561850 ~ 6566179 (-) True irx1a
XM_043261494.1 mRNA upstream 34828 7828215 ~ 7830750 (-) True LOC122360680
XM_043260903.1 mRNA upstream 135142 7928529 ~ 7951085 (-) False cables1
XM_043260901.1 mRNA upstream 135142 7928529 ~ 7951084 (-) True cables1
XM_043261491.1 mRNA upstream 184242 7977629 ~ 7984289 (-) False gata6
XM_043261489.1 mRNA upstream 184242 7977629 ~ 7984289 (-) False gata6
TU163145 other downstream 174222 7610629 ~ 7618585 (-) False cdkal1
TU163147 other downstream 174222 7610834 ~ 7618585 (-) False cdkal1
TU163032 other downstream 591426 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 709283 7081962 ~ 7083524 (-) True G110303
TU162893 other downstream 1692880 6096675 ~ 6099927 (-) True G110215
TU163187 other upstream 35433 7828820 ~ 7830717 (-) False LOC122360680
TU163302 other upstream 297264 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 422642 8216029 ~ 8216595 (-) True G110544
TU163340 other upstream 505402 8298789 ~ 8302245 (-) True G110554
TU163343 other upstream 518878 8312265 ~ 8316685 (-) True G110556

Expression Profile