RNA id: TU163199


Basic Information

Item Value
RNA id TU163199
length 1830
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G110449
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7849679 ~ 7904593 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTTACTTATATAACAAAAGACAAGAAAGAACATTGTCACCATATTTCGAGAGCGAATGCATATTTTCAAAGGAATGATCAACGCGAGAAGGATAGTGAATTTAAGATATCCAACCACTATTCTTTGTTTTGTGCAACATAGCCATCATAGAGATCAAGATATGTTCTGTCTGTGAGATATGTTTCAGATTCATCGAGTTTCTGTTACAGAAGTCAAGAAAGATACAGGAAGGTGAAAACACATGATGAACAAATAGAAATGGAATATATGAGTGACcccatatgtttttttttttttatgacaatgGATAAAATACTCTGTTAGATACAATAATGCAAATGTCAGCCATATATTACAGTTCTGTACAAGTACCAGTCTTATGTTGGCTTTCGGACGGAGCTGGATCATCGTCACAGCCCTGTTCGAAAAGCCAGCATTTCCAGCAAAAACATAGCAGGTAAATCAAATTTGACTTTCATTCACAGCAGAGAGGAATTAAACAACCTCTGAGTTCAGCTTACGTAGTGTTTCAGAAAAGTATTTGGACACGTGAGCCACTATTAAAGATGTAGAAATGGCTTTGCATTTGTATATTCAACACAGTATTAAAGCAAAGGGCATTAATGTACATCAGTATAGGTTTTTGAAATACGAAGCAGTGAATACACAAATGTTTGGGATCCgtgctatttttttaagtatgtctcttatgctcaccaaggctgcacttaattgatcaaaaatacagtactattgttataatttcaaatattaattttaatgtatttaaatctaatttattcctgtgacgacAGGAAGTGATTAGTAGCCattttttcagtcttcagtgcctcacgatccttcagatatcattccaatatgctacTTTGgtaattaagaaatatttttattttaataaagaatatttttattgcctattttatgaaaataaaattattcgTAACAATGTTAAAGGCTTAACcgtcgcttttgatcaatttaaatgttgcagcgtaaaaaagctgaaatcttctttaaatatgtttcaCTGAATCTGACAGTCGTCTAATAAAGCTTTAACTTGCTTCAATATTTCGTATCTAGcgcaaaagattttttaaaagtgacttaagtgtccaaatactttgGTGCAACCATATCTTTAGTTTTCGTGATTACAGACGCGATAAAGTGGTGTAATTTGCCTGTTCGTTTCAAACATTATCAACGTTGACTTAAAACGTATTACCTAAAAGTGACGACAAGCTTGTATCATGACATGCCATTTCGGCACACCAGCACGTTTCCACTGGCATGTCCTGTAGTCATTTGGAGAGAGCCACAGTTGTTCGATTCCGACCAAGTCTCGCTCCGAACAAAACGAGCATATTTTGAAAGGTAGCCCAGGTAAAGAAAAGCTTGACGGCAGGCAAAACTGTCTTATCTGCTATAAATAGATGTCCTTCCATCTTTATCTGCTGTTAAGTGGCTCGTTTTAAGAGTTGCTCTTCTGCACAGTGTGCTAGTGCACTTCCAGCCCCATGTATTCTGCATTTTCCGCAGCCGGCAAGTGGCCGTTGGTGTGTGTTTTGCGCTCCAGGGGGCAGAAGTCCTGCTGGTAGTCTGGGTTGTCCATGCTGTTCTGGGGGTTGAAGGCCTGCACGCTGAAGAACGGCTGTCTGGAgaggagctgtgtgtgtgatgtgttcAGATACTCAGGTGGGGCGTCAGCGGGACTCTTAAAGCAGTTCAGGTATTCTTCCTCGGTTTCGTCCAGCGCTGATGAAGAGTGTGGAAGTGTGCGGGGGGGTCCGGGGTGTAATACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163180 lncRNA downstream 56292 7792807 ~ 7793387 (-) True G110437
TU163172 lncRNA downstream 83422 7765887 ~ 7766257 (-) True G110429
TU163132 lncRNA downstream 443683 7398058 ~ 7405996 (-) True G110399
TU163138 lncRNA downstream 456354 7393066 ~ 7393325 (-) True G110405
XR_006252783.1 lncRNA downstream 463346 7369932 ~ 7386333 (-) True LOC122360224
XR_006252846.1 lncRNA upstream 54288 7958881 ~ 7960375 (-) True LOC122360975
TU163265 lncRNA upstream 54698 7959291 ~ 7960038 (-) False LOC122360975
XR_006252839.1 lncRNA upstream 84357 7988950 ~ 7992867 (-) True LOC122360778
TU163295 lncRNA upstream 178307 8082900 ~ 8083300 (-) False mkxb
TU163299 lncRNA upstream 178776 8083369 ~ 8083825 (-) False mkxb
XM_043261494.1 mRNA downstream 18929 7828215 ~ 7830750 (-) True LOC122360680
XM_043261055.1 mRNA downstream 231083 7441898 ~ 7618596 (-) True cdkal1
XM_043260642.1 mRNA downstream 457361 7388716 ~ 7392318 (-) True sox4b
XM_043260643.1 mRNA downstream 648360 7197091 ~ 7201319 (-) False LOC122360222
XM_043261656.1 mRNA downstream 1159453 6650949 ~ 6690226 (-) True LOC122360792
XM_043260903.1 mRNA upstream 23936 7928529 ~ 7951085 (-) False cables1
XM_043260901.1 mRNA upstream 23936 7928529 ~ 7951084 (-) True cables1
XM_043261491.1 mRNA upstream 73036 7977629 ~ 7984289 (-) False gata6
XM_043261489.1 mRNA upstream 73036 7977629 ~ 7984289 (-) False gata6
XM_043261490.1 mRNA upstream 73036 7977629 ~ 7983870 (-) True gata6
TU163187 other downstream 18962 7828820 ~ 7830717 (-) False LOC122360680
TU163145 other downstream 231094 7610629 ~ 7618585 (-) False cdkal1
TU163147 other downstream 231094 7610834 ~ 7618585 (-) False cdkal1
TU163032 other downstream 648298 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 766155 7081962 ~ 7083524 (-) True G110303
TU163302 other upstream 186058 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 311436 8216029 ~ 8216595 (-) True G110544
TU163340 other upstream 394196 8298789 ~ 8302245 (-) True G110554
TU163343 other upstream 407672 8312265 ~ 8316685 (-) True G110556
TU163623 other upstream 728757 8633350 ~ 8636222 (-) True wu:fj39g12

Expression Profile