RNA id: TU163204


Basic Information

Item Value
RNA id TU163204
length 1549
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G110452
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7883932 ~ 7901008 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGGCTCCATTTTGGCCCCTGGTCTGTTATTATCTAACCTTTAGACTATTACCATtcgcattattattatttttactatttctatGCAGATGGCACCTGAAAAGCCATGTGCCTGTCTTATATCATGTCATGGTTTTCTTAACAACTGTTGACCGTGCTGAGATTCAGACTGAAGTTGTTTCCATCACATATATAAAAAGCTTATCATTTCTACAGCACAGTGGTcaactgcttttgtttttattgtgctttataaacaaaatgtgaTTTGATGTGAAAATTGAACTTACCCCGTTTCTGCTATGACAGTTCCCAATGCTGCTGTTGAAActctgaagaaaacaaaacgaacaatgtgtttatttctaactgattaaaaacaagtatgtaattgtaaaatcaatcaaatattgtTGCGTAATAAAGTATTTTTCGCTAGTTTTTCAACAAACAGTGCAAAAGGGGATTAGAATATTGAACTATATTTGTGATTCTAATAATgcagtattattatatacactTATCCTATCATAACTTATACTGCAAAGCCATTAAAAAAGAACTTTAATGAACTCATTTTAATATGGGAGGACTATACAACTACTGATCTACTTTTGAAGAGCCCTGTGATAGTTTTGCAGTGCTAACATATAaggcaatgcatttttttgcattttattatttcagtagCTCTTTATACTAATCCATTCAACTGACATGGAAAGATGATTACTGAGGACTGTATAAATCTTTGTATTCAGCACCACGTGCACAAAACAGGCCTGTACCAGTTACAAGGAGAACAGGAGCCAGCCTTATTGACAAAACCTAGTCAGCAGTTCACTTAAGCATGTCGTAGGTTTTCTTTTGCAAAACACGTTCATAAAACACCAGGAACTAGGGGGGGAAAAACATATACGCTAAATAAGCTACCATCTGTCAGAGAAACTAGAGCCTTAAATGGCTATGCCTCAATGACCGTGTTATATAAGACTCCGTCTGAGCTCAAGGTCTTCGTTCtgccaaaaaaaatttaacaagtGTTGCCCGCGAAAGCAATCAGACTTGAAAGGCTGAAGGAGCTTTTGCACGCACTTAGCGGCAGGCGGGAGGCCAGGAAACACTCAGAACGCTGAGGCCTGGCGAGTCCTCTTGGACAGACGTGCTTTGCTTTTCTGCTGCGGAACGGTCATTAATCAGGAGGCAGCTGGGAGGAAGCGGGGGAGAAGGTGAACAGACAGAAGGACAGCGGAACGGGAAGTGGGTGAAGGAGGCCAGGCCAGAAAGAAGACGAAAATCGGGCCAGGTACGTACGCCTCTGCAATGTGAACTTTCTGTCCTTTTGAGTGAAAGCACACAACGCTGTCATCAGATATCGCCTCCAGTTCCTGCATTACTGGTACCGTGAGGATCGTTCGGCTCTGacagatgttttaaattgtgCTGTCCATAGGGCTGTTGCATTCATTTAGTATGCAATATAGTATAActtgtgatgtgtgtgtgtgtgtgtgtgtAAGAGTCAGTTTGTTGTTTGCTCCCTgacac

Function

GO:

id name namespace
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0019199 transmembrane receptor protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163180 lncRNA downstream 90545 7792807 ~ 7793387 (-) True G110437
TU163172 lncRNA downstream 117675 7765887 ~ 7766257 (-) True G110429
TU163132 lncRNA downstream 477936 7398058 ~ 7405996 (-) True G110399
TU163138 lncRNA downstream 490607 7393066 ~ 7393325 (-) True G110405
TU163116 lncRNA downstream 498536 7376995 ~ 7385396 (-) False LOC122360224
XR_006252846.1 lncRNA upstream 57873 7958881 ~ 7960375 (-) True LOC122360975
TU163265 lncRNA upstream 58283 7959291 ~ 7960038 (-) False LOC122360975
XR_006252839.1 lncRNA upstream 87942 7988950 ~ 7992867 (-) True LOC122360778
TU163295 lncRNA upstream 181892 8082900 ~ 8083300 (-) False mkxb
TU163299 lncRNA upstream 182361 8083369 ~ 8083825 (-) False mkxb
XM_043261494.1 mRNA downstream 53182 7828215 ~ 7830750 (-) True LOC122360680
XM_043261055.1 mRNA downstream 265336 7441898 ~ 7618596 (-) True cdkal1
XM_043260642.1 mRNA downstream 491614 7388716 ~ 7392318 (-) True sox4b
XM_043260643.1 mRNA downstream 682613 7197091 ~ 7201319 (-) False LOC122360222
XM_043261656.1 mRNA downstream 1193706 6650949 ~ 6690226 (-) True LOC122360792
XM_043260903.1 mRNA upstream 27521 7928529 ~ 7951085 (-) False cables1
XM_043260901.1 mRNA upstream 27521 7928529 ~ 7951084 (-) True cables1
XM_043261491.1 mRNA upstream 76621 7977629 ~ 7984289 (-) False gata6
XM_043261489.1 mRNA upstream 76621 7977629 ~ 7984289 (-) False gata6
XM_043261490.1 mRNA upstream 76621 7977629 ~ 7983870 (-) True gata6
TU163187 other downstream 53215 7828820 ~ 7830717 (-) False LOC122360680
TU163145 other downstream 265347 7610629 ~ 7618585 (-) False cdkal1
TU163147 other downstream 265347 7610834 ~ 7618585 (-) False cdkal1
TU163032 other downstream 682551 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 800408 7081962 ~ 7083524 (-) True G110303
TU163302 other upstream 189643 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 315021 8216029 ~ 8216595 (-) True G110544
TU163340 other upstream 397781 8298789 ~ 8302245 (-) True G110554
TU163343 other upstream 411257 8312265 ~ 8316685 (-) True G110556
TU163623 other upstream 732342 8633350 ~ 8636222 (-) True wu:fj39g12

Expression Profile