RNA id: XM_043260483.1


Basic Information

Item Value
RNA id XM_043260483.1
length 1856
RNA type mRNA
GC content 0.45
exon number 7
gene id mkxb
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8082900 ~ 8092455 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTATTCATGTTCCGGGGTTTCGAACCCTCCAGAGTCGGGCTGATATAGCGGAGAGCTGCAGTAGCTGAGCGCAGTGCTGTTGAATATGAGCGGATGGGATGGAAGACACTCAAATTATAGTGTCCTCGTAGTTCAGCGACTAACAGGATAACTTTCATAAGGACATTTCCTGTACGGTCTTTGGAGCTACATTATCATATGGCACATGGCAGTTAATGAATGCAGCGCGAGCAGCGATGAACACGACGGTCTTCAGTAAGTTTGATCAGCTGCGTTTTGAAGAAAGCGGACAGAACGTGGAGAGAACCAGCAGAAGCTATTTAGAGGTGATTGATGGACAACATTCAGATTTACTGACCGGCCACAAAGTGATGGGTGGCACCGAAGCTCTCAAACACAGGAGAaatggTGGAGGGAAGGTGCGACACAAACGTCAGGCCCTGCAGGATATGGCCCGGCCGCTGAAGCAGTGGCTCTATAAGCACAGGGACAACCCTTACCCCACCAAGACTGAGAAGATACTGCTGGCTCTGGGCTCCCACATGACCCTGGTTCAGgtcTCCAACTGGTTTGCAAATGCGAGGCGTAGGCTCAAGAACACAGTTCGACAGCCTGACCTGAGCTGGGCCCTACGCATAAAGCTGTACAACAAATATGTACAAGGCAATGCCGAGAGACTCAGCATTAGCAGCGATGACACAACGTCAGACGATGGGGAGAATCCTTTACAGATTCAGGCCAGCGAATCAGACTATAACAGGCCAACGCACAAGACCGTTATTCAGGACAGCAGAGGCAAAGGGGTGGGGCGTAGCGCAGACCCCTCGGTTTGTGATGATTATGTGTCTCCACCAAAATACAAGAACAGCTTGCTAAACCGCTATCTAAATGATTCCCTTCGGCATGTGATGGCCTCCGAAAAAGTTCTGGACTCTCGGAAGAGGAACCATTCTGGATCGTTTAGTTCCAACGAGTATGAGGATGATTTTCTCTCGCCGTCTTCAGAAGCTGAGGCAAACTTCACCTACCGTACAGTGACGCTGGACTGCGGCACGCGCCAAAGTGAGAGCGGTGCTCGCAAAGGTGGCGGAGGAGGAAATAACGAGACCTACTGGAAAGAGCTCCATGCCGCCATGGCCCTGACCAACCTGGCCCAAGGGAAGGAGACCTCAACGTCGGGCACAACCAGCTGTATCATCCAGAAGTCTTCCCATATAGCAGAGATTAAGACTGTCAAAGTACCCATACAACCCCGACATTAGTGGCTAACAGACTGGACAGCGCTCTGTACTCTGTCATAATTACTAAAAGACTACCTGAACACTTGAGTATGTACTACATGCAATAATTTTGTTGAAAACGATCCACAACAGCCTTTTCTAGGAGGAAAACTACATGTTGACCGACCAACGTgcctatttttttcttttccttttttttttcgtacCACTGTCCAATGAAAAATGACATAGTGAAGAAAGTTTGATGTGTGGAAGATCACTACAACTAAACACAGAAGCACAAAAATATGATCTTATTCCGATTTAGACtctgaaatacaatttttgtcagtagctaaaatgtaatatattcatatatatattcaattttcCTAAgttatgttaattttatttttaatcgaCACAGGATTGTTGTCATCCTATGGCAATGGCATATACATGTGGGTTCTTGTGTTTAAGTATTGCATATAGAGgaagtttctttttctttcttttttatattcttttttttttttttgaatttttttaacaaaccttTGGTTTGTTATTGGATGGCTTTTAAGTTCATTTGGGCCATTGCCTGTGAAGATAATCATGCAAAATTCAGTCAAATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252839.1 lncRNA downstream 90039 7988950 ~ 7992867 (-) True LOC122360778
XR_006252846.1 lncRNA downstream 122531 7958881 ~ 7960375 (-) True LOC122360975
TU163265 lncRNA downstream 122868 7959291 ~ 7960038 (-) False LOC122360975
TU163204 lncRNA downstream 181898 7883932 ~ 7901008 (-) True G110452
TU163329 lncRNA upstream 142453 8234908 ~ 8235793 (-) True G110546
TU163331 lncRNA upstream 145303 8237758 ~ 8239176 (-) True G110548
TU163610 lncRNA upstream 455327 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA upstream 455327 8547782 ~ 8551552 (-) False G110753
TU163638 lncRNA upstream 497443 8589898 ~ 8590634 (-) True G110773
XM_043260585.1 mRNA downstream 8602 8067575 ~ 8074304 (-) True LOC122360189
XM_043260586.1 mRNA downstream 10026 8069000 ~ 8072880 (-) False LOC122360189
XM_043260652.1 mRNA downstream 29721 8005718 ~ 8053185 (-) False mib1
XM_043260404.1 mRNA upstream 12771 8105226 ~ 8143954 (-) True mpp7b
XM_043260193.1 mRNA upstream 102646 8195101 ~ 8200339 (-) True adipoqb
XM_043261660.1 mRNA upstream 146876 8239331 ~ 8256537 (-) True LOC122360799
XM_043261753.1 mRNA upstream 203571 8296026 ~ 8298481 (-) True LOC122360914
XM_043261729.1 mRNA upstream 249145 8341600 ~ 8363640 (-) True LOC122360896
TU163187 other downstream 252189 7828820 ~ 7830717 (-) False LOC122360680
TU163145 other downstream 464321 7610629 ~ 7618585 (-) False cdkal1
TU163147 other downstream 464321 7610834 ~ 7618585 (-) False cdkal1
TU163032 other downstream 881525 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 999382 7081962 ~ 7083524 (-) True G110303
TU163327 other upstream 123574 8216029 ~ 8216595 (-) True G110544
TU163340 other upstream 206334 8298789 ~ 8302245 (-) True G110554
TU163343 other upstream 219810 8312265 ~ 8316685 (-) True G110556
TU163623 other upstream 540895 8633350 ~ 8636222 (-) True wu:fj39g12
XR_006252934.1 other upstream 554959 8647414 ~ 8647555 (-) True LOC122361375

Expression Profile