RNA id: TU163343


Basic Information

Item Value
RNA id TU163343
length 4421
RNA type TUCP
GC content 0.47
exon number 1
gene id G110556
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8312265 ~ 8316685 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTGTACTTGGCGGGAAGTACcaactgttttctctctttggTAAGTCTGAACAAGAGATCACTTTCGAGACCAAGTTTTCCCCATTCATGAAATAATCTTTGGCTCCCCACTTGCTCGCTTACGTATTTCATCAGTAAGGAGTGAACCTGCTTCCTTTAGCCTTATGACTTCACCAATGGAGTCGTCTTCTCTCTGTGCCTGTACCAGCTCATCGTGGCTAATGGTGACCAACTGATCAAGGGAATGGTTAGGTGAAACATGAGATGAGATTTTAAGAGCAGTGACCCAGGCCACATCTTTCTGCTTAGCCACTCTACTTCCATCCCAGACAGCACAAACCACATCGCTTGGGAATTCCTCTGTACAAGACTTTGTGTAACTGTCAATGTCCAGTGGGACGCGTGACAATGTGTCAGCATCTGCATTGGACTTTCCAGGCCTGTATTTGATGTCAAATCTAAAATCGGAAAGTTCCCCAACCCATCTATGGCCTACTGCATTGAGTTTAGCCGTACTCATGACATAGGTTAATGGATTGTTGTCAGTATATACGGTGAAGTAAGGGGCGTAGAACAAGTAGTCTCTGAACTTCTCACACACCGCCCACTTCAGCGCAAGAAACTCCAATTTCCCACTGTGTAGATGATAATTACGCTCAGCCGGTGTGAGCGTTCTCGACCCGTATCCAATGACTTTCAACTTGCCCCCTTGGTCTTGATATAGGATGGCACCAAGCCCTTGGTCTGAAGCATCTGTATGTAATACAAAAGGTAGATTAAAGTCTGGGTAAGCTAACACTGGAGGACTAACAAGCAAATTAATGAGCTGTTCCAGTGCTTTTTGGTGGATTGGCATCCAGTTCACGGGTGTCCGTGATGCCATTTGTGGTCCCTTGCTTTTACCACTCAGTGGAGTTGCTGCTTCTCTCTTACCTTGGAGTAACTCGTAGATTGGCTTGGCTATTCGTGAAAAGTCTTGAATATAAGAACGATAATAGCCCAGAAATCCTGTCAGCTTTCTCACGTCTCCGGCTGTCTTTGGGGTCTTGCTGGCTAGCAAACGCACTGCATCCAGGTCCTTAGGATCAATCCTCACCCCCTGAGCTGACACGAGGCGGCCAACATACCTGACTTCCAATCGAAAGAACTCACATTTTTCCGGCCTTAGCTTCACCCCATGTTTCTGCAGTGCCTGTAAGACTTTCCGAACTCCTTCTACGTGTTCCTCGAAGGTTTTTGCATAACAGAGGACATCATCCAGATATGGGATGCAACACTCATCACGCAGGGTACCTAGCATTTCCTCCATGCTCCTCTGGAAGGCCGCTGGGGCGTTTGATAGGCCAAATGGGATTCTCACCCATTCATACAGCCCCAAGGGGGTGGTGAAAGCTGTGACATGTCTAGAGTCCTTGGCAATAAAACCCTGATGATAGGCTTTACCTTGATCAAGTATGCTGAACCAAGTATAGCCACCCAGGGAATCTGTCAGATCCTGTATCCTGGGCAAAGGATGTCTATCGGGGATTGTTTTTTGGTTCAAAAGACGATAATCAATACAGAGGCGGAGCGTCCCATCTTTCTTTCGGACACAAACCACTGGTGAAGCATAGGAGGATTTTGATTTGACAATCCAGCCTCTCATTAACAGGTCCTGTATATACTCTTTGACCTCTTTAAATAGGGGTTTTGGGACAGTGACATATGGGCTCTGCACTGGAATCTCATCTTTCAGTGTGATCGACATCCGTAAGCTAGGGATACAGCCAATATCTTGACTATCCTTGGCAAACGCAGCTGACTCTTCAAATAGCATCTTCTTCACCTTTCCTTGCTGGTCATCGTTAAGGTGACTGAGGTTCACTGGAGGGTGCCACAAAGCTGAGCAGGGCACAGTATCTGCCAATGGGGCAGCACTGACTACTACTCTTGTCTTGGAGCTCTCCGGTGAGCCTGCTTCAATCACCTTCGCCACCGTCTGTACACTACCCAGTGCTGTCCTTCTCGGTATAGTAATAGAGTGTTTTGTGCTATTCTTGACCGGGACAGTGACATAAGGTTTCTTGGCACACTGTACTTTCAACAGACCCTCCTCTATCCCTAACTCTGTCAGCAGGGCACTGTTTTCATCCGGTTCAAAAAAGAGGGGCTCTGACTGATCAACAGCGGATGAGACAAGGCACTTTATCCAGGCCACCTTCCCAGATGGAATCACTGTGTCACGATTACCCGACCGCAGACGTTCCTGCCGCACAGATGCTTTGCCAGCCTGAATGAAACTGACTAGCAGCGAAGCTTTCTCAGGGTGTATTGACATCGAATCAGACAAAAGATGGCTAATAGTTGGAATGAGTTCAGCTGGCTGACCCTGGATAACTGCCTCTAACACATTGAACCCCAGTAGTGGCTGGTCAAGGGGGATGCTACACACAAGGAAAGGTACTATAATGGGCTCGCTGAGACTGCCCTTTTCAAAACTGACGGTGATAATGACCCAGCCGTCGAAAGGGAGAACATCCCCATTCACTGCATGGACCTCCAGCTCCTCCTTGTCGTCAAACATCTCACCTAGGGGCCTCAGTGGTGTGTCTGGTAAGTATCTTCTCTTCCAGCCTCTGTCAATCATGCTCACCTGAGCTCCTGTATCTAGCAGCGCCATGGTTATTAAGCTATCGAGATTGCACCGAACCAGAGCTTTAGCTCCTATAAAGTTAGCTAGACGCCTGCTCTCCTGAGTGGGTAGGGAAAGGGTGGATTGAGGCAGTGTTTGCTCATTGAAGTCTTTCGGAGCTTGGGTCATTACACCTCGCTTTGTCTTCTTGGTTTGTACTGTGTTGCACTGAGCAGTGTGGTGTGAGCCTACTTGGGACAGATGATGGGGTCCGGTCACTGATTGTCCCGCGGCAGGGACCGGCTCCAGTTTTCCTGGTGCTGAGGCTTCTTTAAGCAACCCACCGCCCTGTGGCCCTCTTCACCACAGATGAAGCAATGGAGACAACCAGAGCGGTTAAGTTCAAGACATCTAGTACAGCTGTACTTCTTCTTCTGGCCTACTTGCACTGGGCAGTTGTGGCATGGCACTGGTTGCTGGGCCCGCTGCAGTTGTTCAACTTTACTCATTAACTTCTCCACTTTCTCTGTCAGCTCTTGGAGGGGATCATCCTTAGGCTTTCTGTCTACATTCGCTTTCTTTGCACTGCTGTCATCTTGCACTGCAGCCACTTTGACTCCTGCACCATGGACATTTACAGCTTTTTGTCGCACAACTGTCCCCAGACGTCGTTGTCTTTCATTTTCAGCGtttgttattttcataatttgcttTAGGATCATCTCATCTGACACGTTGCCATCTGAAAGCAGTGGTTTAAGCTCTCTCGCGATGTCGTCATGTTTGTGGGTGAGGCCCTGATATATTGTGTGAAGAAACATGTCTTgtactgttgttggattgtatTTCACTTCAGAGTCTGCATATTTAGAGGCAAAGAGAATTTTTTGCTTGAGGCCTATGATCCGGTACAAGAACTGTTGTGGTGTTTCACTGTCATTCTGTTTCGTGCACATGAGCTCTTGGAACAATTCAGTGTTACTTCGCCCCCCCAAGTGGGACTGCAAGAACCCTTTTAGCTCCTCTATAGTTAAATCATCTTTGTGCATGAGCATATCTTTAAAGTTTCCGGATTTAATGACTTTGAGAACACCCCTCAGGATTTCAGCCTCACTAAATCGCTCTTTCATACCATCATCGATCTGCCTACAGATGTTGTTGTAACTTATGTCTGAACTCTGGTCACCTATTTGTCCACCTTGAACCTTAAACTCTCTGCGAAGCAGTGAAAGGTCACGAAGAGGAACCTCTCTGTCTTGTGTTTTAGGATGCTCTTGTTCTGGCAtgttgttggtgtgtgtgtgatcagggtATTGTGGGGGCAAGGTTGGTGTGAATGTAACTGGATGAGTCGATGTGGGGCCATGAATGTACTGTAATACCTTGTTACTTAATTCAGCATAGCTAGACAGCATTCTCTGTAACTCTGATTCAGTGTTCTGGGTAGCCTTGCAATCAGTGTTAAGAGGTGTAGTGCTGGGCCCAACTATGTGTGTTGTGTTAAGTGTACTGATATCTACATTCTCATTTACAACCTTAGATGCACTTTCCTCTGTATTTTGTTTAGGTGAAACAACGTGACTCTGAATGATATTGTTCACAGTATCATCAAGCTGCATTAAAACTGCCATACCTGAATCCTCAGACTCTACCAGTGTATCATCATTCATGAAAGCTAGGATATACTCGAAGCAACTCTCTTCATCATCAACCTGAAACATAGATGCATCCTTCCCCGACACAGGACCAATGCTCTTGGCCAATTGGAAAAGTTCATCAGCTGTCAGCACGAGCAGGTTCTTCTTGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163331 lncRNA downstream 73089 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 76472 8234908 ~ 8235793 (-) True G110546
TU163299 lncRNA downstream 228440 8083369 ~ 8083825 (-) False mkxb
TU163295 lncRNA downstream 228965 8082900 ~ 8083300 (-) False mkxb
XR_006252839.1 lncRNA downstream 319398 7988950 ~ 7992867 (-) True LOC122360778
TU163610 lncRNA upstream 231097 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA upstream 231097 8547782 ~ 8551552 (-) False G110753
TU163638 lncRNA upstream 273213 8589898 ~ 8590634 (-) True G110773
TU163682 lncRNA upstream 528840 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 684102 9000787 ~ 9001428 (-) True G110836
XM_043261753.1 mRNA downstream 13784 8296026 ~ 8298481 (-) True LOC122360914
XM_043261660.1 mRNA downstream 55728 8239331 ~ 8256537 (-) True LOC122360799
XM_043260193.1 mRNA downstream 111926 8195101 ~ 8200339 (-) True adipoqb
XM_043260404.1 mRNA downstream 168311 8105226 ~ 8143954 (-) True mpp7b
XM_043260482.1 mRNA downstream 219810 8082906 ~ 8092455 (-) True mkxb
XM_043261729.1 mRNA upstream 24915 8341600 ~ 8363640 (-) True LOC122360896
XM_043261737.1 mRNA upstream 117961 8434646 ~ 8451791 (-) False pals2a
XM_043261735.1 mRNA upstream 117961 8434646 ~ 8451791 (-) True pals2a
XM_043261739.1 mRNA upstream 117961 8434646 ~ 8451726 (-) False pals2a
XM_043261738.1 mRNA upstream 117961 8434646 ~ 8451471 (-) False pals2a
TU163340 other downstream 10020 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 95670 8216029 ~ 8216595 (-) True G110544
TU163302 other downstream 219912 8090651 ~ 8092353 (-) False mkxb
TU163187 other downstream 481548 7828820 ~ 7830717 (-) False LOC122360680
TU163145 other downstream 693680 7610629 ~ 7618585 (-) False cdkal1
TU163623 other upstream 316665 8633350 ~ 8636222 (-) True wu:fj39g12
XR_006252934.1 other upstream 330729 8647414 ~ 8647555 (-) True LOC122361375
TU163829 other upstream 829245 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 954286 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 2430108 10746793 ~ 10748300 (-) False LOC122361037

Expression Profile