RNA id: XM_043260322.1


Basic Information

Item Value
RNA id XM_043260322.1
length 1082
RNA type mRNA
GC content 0.46
exon number 3
gene id wu:fj39g12
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8633350 ~ 8636222 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGATAATAAGGTGCGagagtgaaggagagagagaaaagggatGGAAAAGAGGTGTGTGTTGTGGAAGGGGGGACTTGTAAAGCATATATAGACACCTCATCCTTAGCATTAACATACTCATCCggctcactcaaacacacactcgcttTAAATCACATCCCTGCGCACAGAGGGAGGAAGACAGCGGAGAGGGAAAGACAGGGATGCTCTTAGCAGGTGCCAAAAACTGAgtcgagagagaaagagggatgGAGGACTAAAGCGTTCAGTCTGGTTTTAAAAGCTCCTCGAACTATTATTGAGGTGTATTCGGGATCAACATCGCTTGCACCATGCTGTGCTCCTCTGTATTTGTGGGGCTCCTAGTTCTCCTGGCCAATCCGGTGCCGGGCCACACCCGAACCCTTCACGCCCCTGACAAAGCCATGCAGGTCATCGAGCAGTTCCTCGAGCGCTACAATGACCTTTTGACCCTTGATGATCTTGAGAACCTCACGAGCGACCAATCGGAAGAGCCCATGCAGACCTTCAGCTCTGGGCTAAAGGTGGCAGAATACCCCAAGTGGATTGACATACCTGTGCAGAGAGAGAACGCCTGGCTCCGCCTCTTAAAGGGGGCTTTGGCCAATCAGAAGCGAGCTCCACCGGACCGGTTGCGGAGGGGTTGGAACCGAGGCTGTTTTGGTCTGAAACTGGACCGGATCGGTTCTATGAGCGGCCTCGGCTGCTAATAATGAACTGAGAGGTGGACCGAGACGATGAGACGACTGTTAGCTTTAGGTATAGGTCTGGTTTGGGACTCATCATATTGTGTatttcaatataattatttttacatgggATTTGAAGTGACATGTCTTttaactgtatttgtatttatttcttaacgAAGGTAGTAGTGTTTCTGGTTCcttgagatgtagatgagatacAATCATTTTGATAATCTGCTAGTAGCTTACTAGTAAGTGAAGATCTTAAAGTAACGTCTCAAATAGTCTcaaaatgcatgatttataGAACTTATACTGCTCACCTTCTGTAGTTTTTGCATGaataaaatttcctccatgtcatggtt

Function

GO:

id name namespace
GO:0006182 cGMP biosynthetic process biological_process
GO:0007168 receptor guanylyl cyclase signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163638 lncRNA downstream 43406 8589898 ~ 8590634 (-) True G110773
TU163610 lncRNA downstream 82488 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 82488 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 394864 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 398247 8234908 ~ 8235793 (-) True G110546
TU163682 lncRNA upstream 209513 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 364775 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 368526 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 371285 9007297 ~ 9007532 (-) True G110849
TU163744 lncRNA upstream 395123 9031135 ~ 9031449 (-) True G110852
XM_043261749.1 mRNA downstream 3862 8625617 ~ 8630178 (-) True gapdh
XM_043261743.1 mRNA downstream 8521 8617631 ~ 8625519 (-) False opn9
XM_043261744.1 mRNA downstream 8521 8617631 ~ 8625519 (-) True opn9
XM_043261731.1 mRNA downstream 16799 8600708 ~ 8617241 (-) True iffo1b
XM_043261279.1 mRNA upstream 7146 8643158 ~ 8649731 (-) True nop2
XM_043261281.1 mRNA upstream 15944 8651956 ~ 8653563 (-) True emg1
XM_043261277.1 mRNA upstream 17821 8653833 ~ 8664175 (-) False kel
XM_043261276.1 mRNA upstream 17821 8653833 ~ 8664174 (-) True kel
XM_043261280.1 mRNA upstream 28554 8664566 ~ 8680965 (-) True zyx
TU163343 other downstream 317355 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 331795 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 417445 8216029 ~ 8216595 (-) True G110544
TU163302 other downstream 541687 8090651 ~ 8092353 (-) False mkxb
TU163187 other downstream 803323 7828820 ~ 7830717 (-) False LOC122360680
XR_006252934.1 other upstream 11402 8647414 ~ 8647555 (-) True LOC122361375
TU163829 other upstream 509918 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 634959 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 2110781 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 2225939 10861951 ~ 10883211 (-) False LOC122360812

Expression Profile