RNA id: TU164543


Basic Information

Item Value
RNA id TU164543
length 1289
lncRNA type inter_gene
GC content 0.35
exon number 5
gene id G111450
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11269620 ~ 11286432 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAATGTGTCTGTGCCTTTGTTGCAGGGATGGGTGATGTTTGTGTCAGTAACCATGTTCATCTGTTCATCTTTATACCTTGCCCTGTTTCTGCTGGGCCTGGCTGACAAAATTAACACTGACTGGAATTTCATGGATATGTTCTACCATTTCATCgctatgctgttttattttggtgCGTTTTTGCTGGAAGCTACAGTTTCATCTGCCGGTACATATGCCAACAGCACCTGCATACGCAGACCCCGTGgcaatataataacatttctgGACTATAGAGAATATAGCATTAATGTGACTGCTGCGatattttcatttatagtgACTTTGTGTTATGGCTGTAGCATGTTCATGGGCTTCAGGAGATGGAGAAAATAGCACACAcacacacactcacacacacagtgaaaccagaaactataacaGCTCTTCACTCTTCccacattttgttaaattacaCGATCATGTTTCTACTGATCATTAGATGTTTTATACAAATATCCAAGCCATAAAGTCCAAGGAATTGTGTAGACCTCAGAGAAAGAATTATATCAATGCACAGATATGGGGAAgggtacaaaaaaaattctgcagaaGCATATAGTCTCTTTTACTTTCAATAgaagaaatttaaaaagaacCAGAGCTGGACTTCTGGTCAAACTGAGCAATTGAAACCTAAAAATGTGTGCCTGCCCTCATCTTGAGAGGTGAAGAGGTGACAATTGCTTGGACTTCATGGCTTGGTTTGTGCTTGACATGCATTGTTTACTGCAGGACCATATACAGACAGGAGTGCACTTTTCCAAATCGCGTCCAATCAAATAAAGTTACCACAGGTGGGCTTTTATCAAGTTGTAAAAGCATCTCAAGGATTATAAGTGCAAACAGGAAGgcataatataacaaaattatgaaaaacaaaatgtattggATTTTGAAATAAGGCTGCAACTCGAACAagtgatgagtgtgtgtgtgtgtatatatatatatatttttttaggtgaTTTGGGTGAATAATACACAGTAATGATAcaattttacttgttttaagaGGTTATTATTCAATGGTTCAACAGGcctaatatttcatattttttgtgaatgatagattttgattttaatttctatgcatatttttagtcccaaaagaaatggtaaaatatatttttattttgctaatttaatATCTATTGCTCTAACACCAAGgccacatttttttgttatgtgctttttttgttaaatgcaaatatgtaatatgcataatgtgtttaatataacttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164549 lncRNA downstream 2795 11266596 ~ 11266825 (-) True G111453
TU164548 lncRNA downstream 3406 11266003 ~ 11266214 (-) True G111452
XR_006252822.1 lncRNA downstream 5382 11261627 ~ 11264238 (-) True LOC122360619
TU164527 lncRNA downstream 8572 11260745 ~ 11261048 (-) True G111437
TU164503 lncRNA downstream 43547 11225782 ~ 11226073 (-) True G111421
TU164553 lncRNA upstream 46743 11333175 ~ 11333662 (-) False LOC122360600
XR_006252826.1 lncRNA upstream 193674 11480106 ~ 11481227 (-) True LOC122360676
TU164633 lncRNA upstream 201250 11487682 ~ 11488827 (-) True G111508
TU164642 lncRNA upstream 257484 11543916 ~ 11544332 (-) True G111516
XR_006252859.1 lncRNA upstream 276446 11562878 ~ 11569737 (-) True LOC122361126
XM_043261674.1 mRNA downstream 386196 10857520 ~ 10883424 (-) True LOC122360812
XM_043261964.1 mRNA downstream 446431 10817891 ~ 10823189 (-) False LOC122361032
XM_043261963.1 mRNA downstream 448942 10817891 ~ 10820678 (-) True LOC122361032
XM_043261961.1 mRNA downstream 458603 10808337 ~ 10811017 (-) False LOC122361028
XM_043261367.1 mRNA upstream 46743 11333175 ~ 11386993 (-) False LOC122360600
XM_043261363.1 mRNA upstream 49534 11335966 ~ 11386993 (-) False LOC122360600
XM_043261362.1 mRNA upstream 49534 11335966 ~ 11386993 (-) False LOC122360600
XM_043261361.1 mRNA upstream 49534 11335966 ~ 11386993 (-) True LOC122360600
XM_043261369.1 mRNA upstream 49924 11336356 ~ 11386993 (-) False LOC122360600
TU164396 other downstream 386409 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 403192 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 521320 10746793 ~ 10748300 (-) False LOC122361037
TU163906 other downstream 1997015 9270971 ~ 9272605 (-) True G110974
TU163829 other downstream 2117437 9145930 ~ 9152183 (-) True G110911
TU164609 other upstream 124246 11410678 ~ 11411777 (-) True G111490
TU165859 other upstream 2367628 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2948122 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 3622893 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 4182048 15468480 ~ 15496375 (-) False rps19

Expression Profile