RNA id: TU164931


Basic Information

Item Value
RNA id TU164931
length 1645
lncRNA type sense_over
GC content 0.35
exon number 1
gene id rxrbb
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12363785 ~ 12378449 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtttttaagtaTGGATGCTCCAGTTACCTGACTGGTTTAGATAAGTGGGGTTTACATTTTGATAGAACCATTTGAGGCTTTTAAAACACTGTGGATGATAAGCTTTAATCGTATGTAAGTGTGCTTCACCATCTCTTAAGTTTGGGTGCTTTCTTCCTGTACGGATAATTTATTTTGCCCCGACCTGTAAGGACCGGTCAAGTGGGTAGATAGAAGAATGAATTCATTCGGTATTCTAGGTTTAAATTGACATTTAGCTTTGCTAGTTTGAGAAACCTGGCAAAGGAATCTATATGCAATGATGCTTGAAACGATGCAAAACAGAAAGACTTAGATGTTTAATCTCCAAAAAAGCAATTTACGTGATATTGTGCAATGTTAAGCCTAAATCCAGAGGTGGACGTGAGGGAAATGCAAGCACTCTTTTTTATTATCTCACGCACTCATTTTATTATCACATCATGAGTGCCTAACTGACATATgcttgatatgtttttttttttttttttttaaatgtttgacagACGAAAGGACACACAAAAAGATGAATTTCTGTTCATGTCATCAGCAGACATTGTACGAAGCAGGCCGcttttctttcgtttttttgggttttttttgcctgAAGTGTCCTAGGCTGAAATTGTCTTAAACCTGCATTGGTTTTACTAGTTAACTGTCGGTTAATAATACACTCTCTTCTCTTATCACATATCAGGTAACTGTGTAAGAGTGATAATTCCTTAAGTAAACTGcactacacacaaaaaaaatgtcattccttttttctttttttttttctttttttttgaccagtgtcagattttgtttttcttttaaagattaCTTTTGGTGCTTCGGAAtcgacattttaatattatagcCCTAAAAAGTGCACATGTAAAACTGCAAAAAGGAAAAGTACAGCTGTCTTCGGCTTTATAGAGACACTAAATCTGAGCAGTATGAAAGTTCATCGGCGTGGACTTGCTGTTTGTATTTGGAAAACCTTCCAACTTGAAATTTCTACAATTAATTTCTTCTAGTACTGTGCAGACCCTATTGTTCAGGGACATTGTGTAGCTATATTGTGTAGACATAGACAGGCTAGGAATCAACATATATTCTCTTGCTTTTATCACTTTCTTTAGTTTGTAGTTGGCATACAACTTGCAGTAAAGACATAGTTTGCACTGGATTTTACCATGAATCCTAGACTTTggattttgtcttttatttcctttctgTGACCTGAGCTTATtcgctttttctttttgatctACCATTgagaattttcttttcttttttcttttttttttgcttttccatGGCATCTTTCTGTCCTTGCTGAAAAAGTTACAGGGACAAATGCAAGCTCACTTTTGCCATAGATATatctaacaaacaaacaaacaaacaaacaaacaaacacacaaggtTGTTTTTGTATGGTCTTGTACAACCAACATCTTTACTGCATTAGGCATGTTACATGTCTGTTGTTGCACTAAAATTGTCATACAATTATGATTGTAATGAGATTCCATCAGTTTCGATGTTGTCACGGCTCGTTTTAGAGGAGCTCCGTGACACTGCAAAAGAACCATCTGCTGTACATGACCCTAAATAAAGGTGGTGATATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164952 lncRNA downstream 988 12363785 ~ 12365982 (-) False rxrbb
TU164895 lncRNA downstream 216093 12150542 ~ 12150877 (-) True G111716
TU164892 lncRNA downstream 227440 12139177 ~ 12139530 (-) True G111713
TU164891 lncRNA downstream 229198 12137461 ~ 12137772 (-) True G111712
TU164865 lncRNA downstream 286117 12080652 ~ 12080853 (-) True G111690
TU165001 lncRNA upstream 68811 12437425 ~ 12439653 (-) True G111788
TU165002 lncRNA upstream 71172 12439786 ~ 12440874 (-) True G111789
TU165007 lncRNA upstream 73339 12441953 ~ 12442613 (-) True G111791
TU165033 lncRNA upstream 110820 12479434 ~ 12479788 (-) True G111806
TU165034 lncRNA upstream 112110 12480724 ~ 12480975 (-) True G111807
XM_043260341.1 mRNA downstream 140021 12216856 ~ 12226949 (-) True slc6a19b
XM_043260393.1 mRNA downstream 152621 12208105 ~ 12214349 (-) True si:ch211-254p10.2
XM_043260841.1 mRNA downstream 163882 12155770 ~ 12203088 (-) False rapgef5b
XM_043261441.1 mRNA upstream 24153 12392767 ~ 12397250 (-) True LOC122360649
XM_043260450.1 mRNA upstream 50504 12419118 ~ 12422119 (-) True LOC122360109
XM_043261760.1 mRNA upstream 122884 12491498 ~ 12497557 (-) True ccdc12
XM_043260442.1 mRNA upstream 209247 12577861 ~ 12599994 (-) True setd2
XM_043261936.1 mRNA upstream 437614 12806228 ~ 12825561 (-) False LOC122361014
TU164609 other downstream 955193 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1080538 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 1483759 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 1500542 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 1618670 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 1285446 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1865940 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 2540711 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3099866 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3099866 15468480 ~ 15496375 (-) False rps19

Expression Profile