RNA id: XM_043260346.1


Basic Information

Item Value
RNA id XM_043260346.1
length 5513
RNA type mRNA
GC content 0.40
exon number 10
gene id rxrbb
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12363785 ~ 12378449 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTCCACTAGGAGGCTTGACTAACAAGGTATTTGTCTGGACGCAAACATTTATGGcgtaaactgtaaaatatagatGAAACGATGATTTAAAGGACACGAATCGTTGCTGACGGAGGATTCGGCGTTTGATGGGTGAGACTGGAGTCGATATGCTCATATAAACTCTGcaaatttctgtaaaaatgacgggaaaacaaacaaacacttggACGAGCTAGGCTAAGCTAAGCTAACACGGGCTGGCCGTATTATTTAGTCTCGCCGCTTGAGTTGAGCATACAAGTATTTGTAGGctgcacaaaataataattacacttaAATGGAGCCACGTGTGCGTTATAAACAGTGCATTACGGTTGAAACGGGTGAACCAAATGGTCTTCTTTTAATCATAAACAGTCCGTTAGCAGACATTAGCATGTTAGCTGGGCTCCGCGCTTCGtgctaaataataaacaaccCAAACGTTGTCAGGAGCATTACAATAACGTTCGTTATAGGGTTGAGATGAGCTCACAGCAcagatttttccattttagtcatatattataaattacatatagaGTTGGCAAACATTAGCGCTGATAGTGTCAATTTTGGTGGGGGTGATTATAAGGAACAGATTTGGGCTGCGTCCCGAAACCGAGTGAGGTCCCTACCTAGGCAGCATTTTGGGCAATATGGGCGTGTTCGAAGTTTCAAACCTAGTGAGCTACATATCTAATCTGCATCGTAGGTCATAATAGAATGTTATTAATATGCTCGAACACTTGTATGTTTCCCCAATATGCTGTCTAAGTAGGCAATTTCTTAGTTTTTGATACACAGCCTAATCTGCAGCAGGATTAATAGAGCAGCAAACAGCAGACAAAACGCCTCATATTCTTTCCTAATGTACACATCgcaatattttttccatattttctgAGATACTCAAGAGGAAACACATTTGAAAAGGTGGATATTATTATCAACGATCAAGTCTCCTCTATTGGCCAGTCTAGTGTGCATCTATGAACTCCATACCGCCCTCCACTTCTGCCGTCAGTAGCCCTGTCAGCTCCGTAGATTCGCCACTGTCAGCCGTCAGCTCGTCCATCGGCTCTCCCGGCGTTCCCGGCACGCCATCCGTCGGCTATGGACCCATCAGCAACTCTCAGATAAATTCCTCAATGTCTGTGTCTGGGTTACATGCTGTCAGCAGCTCTGATGATGTGAAACCCCCTTTTGGCTTGAAGTCTGTCAGTAGCTCTGGGCCAATGCTGTCCCAGAAACGCATGTGCGCCATTTGTGGGGACCGTTCCTCGGCTGTTCAGGAAGAGCGTCAGAAGAATAAGGAACGAGATGGAGACTATGAATGCAGCAGTTCAGCCAATGAGGAGATGCCTGTGGAGAAGATACTGGAGGCCGAGACGGCTGTAGAGCACAGATCAGACTTACACTCTGATGCCACTGGTTCACCCAACGATCCAGTCACTAACATCTGCCAGGCTGCAGACAAACAGCTGTTCACTCTGGTGGAGTGGGCCAAGAGAATCCCTCACTTCTCTGAGTTGCCCCTGGATGACCAAGTCATTCTGCTCAGGGCTGGATGGAATGAGCTCTTGATCGCTGCCTTCTCCCATCGCTCCATCAGCGTGAAGGATGAGATTCTGTTGGCCACAGGTCTACATGTGCCCAGAGACAGCACTCACAATTTGGGAGTGGAGGCCTTTTTTGACAGGGAAAGTGCACACAGTGCAGAGGTGGGGGCCTTATTCGACAGGGTGTTGACTGAGCTGGTCTGTAAGATGCGCGATATGCAAATGGACAAAACCGAACTTGGCTGTCTGCGTGCCATAGTTCTGTTTAACCCAGATGCCAAAGGTCTGACTAGCAGCAGTGAGGTGGAGCTTCTCAGAGAGAAAGTGTACGCGTCCCTGGAGGCctattgcaaacaaaaatacCCAGATCAGCAGGGGAGGTTCGCCAAGCTCCTCCTCCGACTTCCTGCATTGCGTTCCATTGGCCTTAAGTGTCTGGAGCACCTTTTCTTCTTTAAACTGATCGGAGACACCCCCATTGACACTTTCCTAATGGAGATGCTGGAGTCTCCCCACTAGCTGCGTCAGAGGAAGAATGGGAGACAGGGTTTTTCTACCCTAGGTCCTGGAGATAACTGTGACTGCACTTTTTCTTCCCAGGGGAATTACAACGATTGGTCAGCCTCTGGTCTGggggtttttggtttttttttttttagttcagatattacttttctttttctcttgaCTATCTCTTAAGTGCACCATAGAGTCTAGAGACCCAAAACTTGCCATGAAAAATTGTTGGTGCTACATTTCAACAGTAAgctaatttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatataaacaagtttaaaacttaatgtttttaagtaTGGATGCTCCAGTTACCTGACTGGTTTAGATAAGTGGGGTTTACATTTTGATAGAACCATTTGAGGCTTTTAAAACACTGTGGATGATAAGCTTTAATCGTATGTAAGTGTGCTTCACCATCTCTTAAGTTTGGGTGCTTTCTTCCTGTACGGATAATTTATTTTGCCCCGACCTGTAAGGACCGGTCAAGTGGGTAGATAGAAGAATGAATTCATTCGGTATTCTAGGTTTAAATTGACATTTAGCTTTGCTAGTTTGAGAAACCTGGCAAAGGAATCTATATGCAATGATGCTTGAAACGATGCAAAACAGAAAGACTTAGATGTTTAATCTCCAAAAAAGCAATTTACGTGATATTGTGCAATGTTAAGCCTAAATCCAGAGGTGGACGTGAGGGAAATGCAAGCACTCTTTTTTATTATCTCACGCACTCATTTTATTATCACATCATGAGTGCCTAACTGACATATgcttgatatgtttttttttttttttttttaaatgtttgacagACGAAAGGACACACAAAAAGATGAATTTCTGTTCATGTCATCAGCAGACATTGTACGAAGCAGGCCGcttttctttcgtttttttgggttttttttgcctgAAGTGTCCTAGGCTGAAATTGTCTTAAACCTGCATTGGTTTTACTAGTTAACTGTCGGTTAATAATACACTCTCTTCTCTTATCACATATCAGGTAACTGTGTAAGAGTGATAATTCCTTAAGTAAACTGcactacacacaaaaaaaatgtcattccttttttctttttttttttctttttttttgaccagtgtcagattttgtttttcttttaaagattaCTTTTGGTGCTTCGGAAtcgacattttaatattatagcCCTAAAAAGTGCACATGTAAAACTGCAAAAAGGAAAAGTACAGCTGTCTTCGGCTTTATAGAGACACTAAATCTGAGCAGTATGAAAGTTCATCGGCGTGGACTTGCTGTTTGTATTTGGAAAACCTTCCAACTTGAAATTTCTACAATTAATTTCTTCTAGTACTGTGCAGACCCTATTGTTCAGGGACATTGTGTAGCTATATTGTGTAGACATAGACAGGCTAGGAATCAACATATATTCTCTTGCTTTTATCACTTTCTTTAGTTTGTAGTTGGCATACAACTTGCAGTAAAGACATAGTTTGCACTGGATTTTACCATGAATCCTAGACTTTggattttgtcttttatttcctttctgTGACCTGAGCTTATtcgctttttctttttgatctACCATTgagaattttcttttcttttttcttttttttttgcttttccatGGCATCTTTCTGTCCTTGCTGAAAAAGTTACAGGGACAAATGCAAGCTCACTTTTGCCATAGATATatctaacaaacaaacaaacaaacaaacaaacaaacacacaaggtTGTTTTTGTATGGTCTTGTACAACCAACATCTTTACTGCATTAGGCATGTTACATGTCTGTTGTTGCACTAAAATTGTCATACAATTATGATTGTAATGAGATTCCATCAGTTTCGATGTTGTCACGGCTCGTTTTAGAGGAGCTCCGTGACACTGCAAAAGAACCATCTGCTGTACATGACCCTAAATAAAGGTGGTGATATGTCTAACAGCTCTGTTCTTGGAGAGTTCATATAAGTTGCATGtcctttttttcttgtaatctCACTATGGgactcagaaataaaggtacaaaagctgtgacTGGGCCGGTACCTGTTCAAAAGGGATACGTGTGCACCTAAAGGGTTCACTTTGGTACCTTGAAGACTCTGGGTACGTTTAGTGCATTTATTCTTTAAGGTATTCGAAAACGTGGAAAACTCTGCTTTAAGTTTGAATATTCTGAGTTTGTGTTTTAGCATAAATGGAAAACGATGACTGGCTGTCCACATTCGCTCAGTCTGCGTATCAGTGATCGATGATAACATTACTTGCACGAACGGTCATGTGACATGCATTTTCGGTCGTGTAGTCTAGACGGAGATCGTTTCTGAAACGCAGTGATAACGCCAGTGTAGCCGAGGatctttttatgttaaaatgctgttttaaaactaaaacgcaccagtgtaaaaaaaacacaaaaacaaatttcatATGACCATACCTCCCAGCTATATCTTTTCCTGGTTAACTGCAACTATACctctcaaaatgctttttttgtagcGCCCCGCAAAATGTGTCTCTACTTTTTAGttaaggtttttgtttgtcctgtCTTGCACTGACTTCAGATCAAATTCAATATCAATTACAAGAAACATTACATCTCAATGTCACTTTATACTCCACAAATGCAGTTTGTATTTCGCCATGCAAGATCACATCAAgaaattttagtatttaattgtaACTTTACAGATATGCCGACCTTAAATCTcccaaaatgttttgcaattaCAACTTACATCTCCCAGCTGTGTCGACCCATTTTACAATGTGGCGTTAtcgtaaatgtttattttacaacaaactGAATTTGTGAGATTTTTGGTTATTTTCCCCACAAGTTTGGTTCGACCGAATCATGTTCTCGTCTGAGAACAATTACACTagcaccacaaaagaaagaaaccaaCTCGGTGTTCTGGGTGTTGCTGTAAAAGCTTTTTATTGCAAAGTACAGTAAATGCTTTTTCCTTTTGGAATTTAGAAGTCAAATTTTCACATTCtcgatctttttttttttaaaccaacatTTTATGGCACTTGAAGCAATGGGTGAAATTCTGTATGCGAGTGCAATAATATCAAAGGCCATTTGAGCAGGGCTGATGGGTGCATGACAGTGTTTCAAGTCTGTGCTGCGTAAACACATGAAACAAAATCTACGTTCACAGGGTATCGAGACGCCACAGGCTCTATCCGTTTAGCCAAAAATAAAGACATCGCCTGCCgatattgttattgtttgaaCCATGCATGGCTTATTTTCTCTTAAATTAGAATTTTCACAGAATAACACTGCTTTTGACTTATAATACACTATtctatacaaaatacaaacaaaaacatgaaca

Function

GO:

id name namespace
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164895 lncRNA downstream 214673 12150542 ~ 12150877 (-) True G111716
TU164892 lncRNA downstream 226020 12139177 ~ 12139530 (-) True G111713
TU164891 lncRNA downstream 227778 12137461 ~ 12137772 (-) True G111712
TU164865 lncRNA downstream 284697 12080652 ~ 12080853 (-) True G111690
TU164864 lncRNA downstream 288543 12076453 ~ 12077007 (-) True G111689
TU165001 lncRNA upstream 58985 12437425 ~ 12439653 (-) True G111788
TU165002 lncRNA upstream 61346 12439786 ~ 12440874 (-) True G111789
TU165007 lncRNA upstream 63513 12441953 ~ 12442613 (-) True G111791
TU165033 lncRNA upstream 100994 12479434 ~ 12479788 (-) True G111806
TU165034 lncRNA upstream 102284 12480724 ~ 12480975 (-) True G111807
XM_043260341.1 mRNA downstream 138601 12216856 ~ 12226949 (-) True slc6a19b
XM_043260393.1 mRNA downstream 151201 12208105 ~ 12214349 (-) True si:ch211-254p10.2
XM_043260841.1 mRNA downstream 162462 12155770 ~ 12203088 (-) False rapgef5b
XM_043261441.1 mRNA upstream 14327 12392767 ~ 12397250 (-) True LOC122360649
XM_043260450.1 mRNA upstream 40678 12419118 ~ 12422119 (-) True LOC122360109
XM_043261760.1 mRNA upstream 113058 12491498 ~ 12497557 (-) True ccdc12
XM_043260442.1 mRNA upstream 199421 12577861 ~ 12599994 (-) True setd2
XM_043261936.1 mRNA upstream 427788 12806228 ~ 12825561 (-) False LOC122361014
TU164609 other downstream 953773 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1079118 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 1482339 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 1499122 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 1617250 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 1275620 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1856114 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 2530885 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3090040 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3090040 15468480 ~ 15496375 (-) False rps19

Expression Profile