RNA id: TU165002



Basic Information


Item Value
RNA id TU165002
length 702
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G111789
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12439786 ~ 12440874 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATCTCTTGTAACAACCCGATAAAACCAGTTTGATTCTTTCTCGAGCATTATTTGATACCTTTTCTCATCATTGAACGGAACGAGGTTGAGTGGGAGATGAAGGCCAGGCCAGCAtcattaaaaacagcagctgtgttCTCTCCACCGCCATACGAACACCCCAGATCATAAGACTGCATGGAGAGAACCACCTGTTTTGGAGTGAGTTTGTTTTGAGCACCCAGGGCGTAAATGGCTTTGTCCACAACTAGTAAGGCCACTTTTGCATTCTTTTGCTCTCCTACGTCAATGTCGAGCTCGACGGTATCATCTGGATGGTATCTATGGTCTTCGTGCAGTTTTATCTCAAGCTAACCTCACACATGTCTTCTACATCTATCCATTCTGAGTTTGCAACGACGTCACCGTCTGTGTCATAGTAATAGGCGATCACTCTGAAGGACGGGATCATCTCTGGACGGATACGGATGGGTATTTTTACTTCAGAACCTGATGCAACAGAGCTCGCTGATCTCAGCATGCCTCTGCTGAGAccatataatatattttcccaTCTTCTGGTTTGCCTTcgatataaaatgtaacatctaGAGACTCTTCTAGTGACAGGACTTTATTAGTCACAGTGATATGCAGGAAACTGTTTGTTGAGGATTTCATTGGGTGCACTACTTTTGTTGACTTGATATCATCCACTGTTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU165001 lncRNA downstream 133 12437425 ~ 12439653 (-) True G111788
TU164932 lncRNA downstream 71172 12366789 ~ 12368614 (-) False rxrbb
TU164931 lncRNA downstream 71172 12366970 ~ 12368614 (-) False rxrbb
TU164952 lncRNA downstream 73804 12363785 ~ 12365982 (-) False rxrbb
TU164895 lncRNA downstream 288909 12150542 ~ 12150877 (-) True G111716
TU165007 lncRNA upstream 1079 12441953 ~ 12442613 (-) True G111791
TU165033 lncRNA upstream 38560 12479434 ~ 12479788 (-) True G111806
TU165034 lncRNA upstream 39850 12480724 ~ 12480975 (-) True G111807
TU165036 lncRNA upstream 45977 12486851 ~ 12487693 (-) True G111809
TU165016 lncRNA upstream 48908 12489782 ~ 12490120 (-) True G111799
XM_043260450.1 mRNA downstream 17667 12419118 ~ 12422119 (-) True LOC122360109
XM_043261441.1 mRNA downstream 42536 12392767 ~ 12397250 (-) True LOC122360649
XM_043260346.1 mRNA downstream 61346 12365550 ~ 12378440 (-) False rxrbb
XM_043261760.1 mRNA upstream 50624 12491498 ~ 12497557 (-) True ccdc12
XM_043260442.1 mRNA upstream 136987 12577861 ~ 12599994 (-) True setd2
XM_043261936.1 mRNA upstream 365354 12806228 ~ 12825561 (-) False LOC122361014
XM_043261935.1 mRNA upstream 365354 12806228 ~ 12825561 (-) True LOC122361014
XM_043261932.1 mRNA upstream 398187 12839061 ~ 12944070 (-) False col14a1a
TU164609 other downstream 1028009 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1153354 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 1556575 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 1573358 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 1691486 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 1213186 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1793680 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 2468451 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3027606 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3027606 15468480 ~ 15496375 (-) False rps19

Expression Profile