RNA id: TU165120


Basic Information

Item Value
RNA id TU165120
length 1574
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G111862
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12567205 ~ 12652406 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caataagcaAATAGTatcacataaataatttaaatgtagttgGTAGATAGTAAGTAAGATCAACTAATATACAGTGGtatcaataaaacataatttagaaGATATTATGCTCTTACACATTATGTTTTCAAGCATATTATGATAATAAGCTTAGCCCACGAGTTATAATGAGTTTACTGTCCTCTGCTGGTGAAGCGCTGGAGTCACATTAACAGAAGCTTcagaaaaatcaaacaacacGGCATACCATGTTCACAGAACCCCAAACCTTTATTTTCACCAAAGTTTGCACACACAGAAATGAGAGggggggagggagggagggacaATTTTGGCAGCCGAAGACACTTCAAGCATATTTATAGAGGAGACAGTgatctgaaaaataaatccaaataaaagcataatcaTTCGGTGCATATTCCACATCGCTTCACTTCCAGAGAGAAAGAACACAAATGCTCGGTCAACctaacatgaacacacacacacgcgcgcgcactcGCTCCAGTCGCACGAAAATCAACCGAATTAGAAAATAGTCACACGTCAAAGGCTGTAGTTGGGAGTATATGAGGATACATTCAGCTGGTAAAGATGTTACCTATTTTATCAAGCCAGAACATTCAGAGATATACGACTTCCTTTAATTACGCCGATGAAGATGTCTGCTCCCGCTAGACACAGAGGACAAAACATCAGCCTCGAGCGCCGAAGGCCTTAATCGATGTCGAGGAAACGGGGCAGGATCGACGGAAAGAAACCCCTCGCTCGCAGGTCAGGACCGGCCGCtagtttttccttttcttttgtaatATAACGCAGGCTACGTCAAGCGGTCTAGACTCTTCGTCTAAAAGGGTGCAGCGTTTCCAAACATCAGCCAACAAAAGAGTACGTTCGCAGAGGTCGACATGCAGAGATGTGCGTAACATACTTCACGTGAGGATAATAAGCCAAAAGAAACCTAAAACACGTTTTGCCTACAAATGAAACACTattaacaggtttttatttgtttcgGTACTCGTATTTCAAGCTATCCGTTCAGGAAAATGTCTCGGTCATGCTGTATATAAACGTAAGTGCACTATATATTTCGTGAGTCTGGGTGGGTTGGCGTTTCAAAATGGAAATCTGGGGCCTGAGCGCTTTTTTGCATTCTTCACAATTACACCGAACTTCACATCATTTAACACCGCGAACGTAAGCGGGCGGCTTACTCACAACATCGAAAACCTTTCACGTGATCAAACCGGACGTGCCTCGGACGGAACAACCGCGAAATCGACAAATAATAACCGGAGGGTCGACGTGATGCATTGGATTTGCTATCGCTCGATCGGATGGACggaaagatagatagatggagagaaagactgagcagtgagagagagagagataaaaaagatgtatttacaaaataatacttGTGTCTTCCCGTTACTCTATGAAATCAAGCAAGACCGTTCAAACAGTATACGTGTGTGATGCTAGGTGtttaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165016 lncRNA downstream 77085 12489782 ~ 12490120 (-) True G111799
TU165036 lncRNA downstream 79512 12486851 ~ 12487693 (-) True G111809
TU165034 lncRNA downstream 86230 12480724 ~ 12480975 (-) True G111807
TU165033 lncRNA downstream 87417 12479434 ~ 12479788 (-) True G111806
TU165007 lncRNA downstream 124592 12441953 ~ 12442613 (-) True G111791
TU165647 lncRNA upstream 400314 13024933 ~ 13026129 (-) True G112229
TU165679 lncRNA upstream 563300 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA upstream 572259 13196878 ~ 13200640 (-) True G112256
TU165691 lncRNA upstream 589311 13213930 ~ 13227818 (-) True G112261
TU165689 lncRNA upstream 592584 13217203 ~ 13249624 (-) True G112260
XM_043261760.1 mRNA downstream 69648 12491498 ~ 12497557 (-) True ccdc12
XM_043260450.1 mRNA downstream 145086 12419118 ~ 12422119 (-) True LOC122360109
XM_043261441.1 mRNA downstream 169955 12392767 ~ 12397250 (-) True LOC122360649
XM_043260342.1 mRNA downstream 188766 12365550 ~ 12378439 (-) False rxrbb
XM_043261936.1 mRNA upstream 181609 12806228 ~ 12825561 (-) False LOC122361014
XM_043261935.1 mRNA upstream 181609 12806228 ~ 12825561 (-) True LOC122361014
XM_043261932.1 mRNA upstream 214442 12839061 ~ 12944070 (-) False col14a1a
XM_043261934.1 mRNA upstream 214442 12839061 ~ 12943704 (-) False col14a1a
XM_043261928.1 mRNA upstream 214442 12839061 ~ 12943704 (-) False col14a1a
TU164609 other downstream 1155428 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1280773 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 1683994 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 1700777 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 1818905 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 1029441 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1609935 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 2284706 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2843861 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2843861 15468480 ~ 15496375 (-) False rps19

Expression Profile