RNA id: TCONS_00011049


Basic Information

Item Value
RNA id TCONS_00011049
length 523
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_005035
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 180200 ~ 180809 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGAACTGTCTGTCTAACAATGTGAGCTTATAAGTGAATAATGATGATGGAGGCAGGAGTTCTGGTCGGATTGTGGCTGTATTCCCATGGCAGCACCAGGAGAACACGGTATTACACGATCTGAAAAGCTGACTCAAAGCACACAACAGCACGTCACACGAGTCTAGATGTTCTTACAGCTAATTGTACAAACAGACTGTCCAAGAGCCGCACTTCACTGCCAGCACTCAGGGCGGCTTCATACAGCGGCTGGAGAATGTGTGGCCTGAGGAGACACACACTGGAGATCAGTGATGGGGAGAGGAGTATAGCGGAGTGCGGCAACATGCAGTAATGTGAACACATGTGGAGTAACGGGAAGCAGAGTGAAGGGCAGGATTATCAAGAGCAGTGAACTACAGTAATGTGAACTGAAGAGGAGAGAAGTAAAGCAGAGTAAACTACAGTAATGTGAACTGAAGAGGAGTGGAGTAAAGCTGAGTAAACTACAGTAATGTGAACTGAAGAGGAGTGGAGTAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011048 lncRNA downstream 4681 171286 ~ 175519 (-) True XLOC_005034
TCONS_00010787 lncRNA downstream 114440 64267 ~ 65760 (-) True XLOC_005031
TCONS_00010786 lncRNA downstream 134616 43830 ~ 45584 (-) True XLOC_005029
TCONS_00010785 lncRNA downstream 137961 40988 ~ 42239 (-) True XLOC_005028
TCONS_00010784 lncRNA downstream 139263 39742 ~ 40937 (-) False XLOC_005028
TCONS_00011050 lncRNA upstream 69272 250081 ~ 279335 (-) False XLOC_005037
TCONS_00010788 lncRNA upstream 72198 253007 ~ 276795 (-) True XLOC_005037
TCONS_00011051 lncRNA upstream 81587 262396 ~ 265201 (-) True XLOC_005038
TCONS_00011052 lncRNA upstream 156999 337808 ~ 355531 (-) False XLOC_005042
TCONS_00011053 lncRNA upstream 156999 337808 ~ 355555 (-) True XLOC_005042
TCONS_00009817 mRNA downstream 35124 137149 ~ 145076 (-) True XLOC_005033
TCONS_00009816 mRNA downstream 55936 118704 ~ 124264 (-) True XLOC_005032
TCONS_00009815 mRNA downstream 125825 52468 ~ 54375 (-) True XLOC_005030
TCONS_00009814 mRNA downstream 133215 42592 ~ 46985 (-) False XLOC_005029
TCONS_00009813 mRNA downstream 137986 32370 ~ 42214 (-) False XLOC_005028
TCONS_00009818 mRNA upstream 23286 204095 ~ 212843 (-) True XLOC_005036
TCONS_00009819 mRNA upstream 100357 281166 ~ 287633 (-) True XLOC_005039
TCONS_00009820 mRNA upstream 107299 288108 ~ 290815 (-) False XLOC_005040
TCONS_00009821 mRNA upstream 107956 288765 ~ 290413 (-) False XLOC_005040
TCONS_00009822 mRNA upstream 108977 289786 ~ 290782 (-) True XLOC_005040
TCONS_00009831 other upstream 438860 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009859 other upstream 1309663 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009912 other upstream 4105557 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 4114740 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 4117048 4297857 ~ 4301375 (-) False XLOC_005113

Expression Profile

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