RNA id: TU165647


Basic Information

Item Value
RNA id TU165647
length 401
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G112229
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13024933 ~ 13026129 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGATAGGAGAGGTGAATAACGGTagatataacaacaataatggtGGAAACCCAAAAAACAGTAACTTTGAATATACTATCTGCGCTTGAGACTGAATCGAAATCACGTGAGGAAGAAAATCATACTCTAATTTTCCACACAGAGGGACGAAAGGAGAACTGACAAAAGAGCATGGAACTGTTTTGGTGTGCTGGAGTGAAGGCTGTGTCTGCTGGATGGTGACCACACCTGCAGCTCTGCTGAGCCagctctccttctctctccatCAGCAAACCTAAATGTTATGACAACCTTCCTCGCCTCAGCCAACTACCGCTATCGCTTCATCTAccgtgagagagtgtgtctgtccAGTGTGTGCCTTACGGAGAGTGGGGAACTCTTAAATGAGTCTTTAAT

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165121 lncRNA downstream 372527 12567205 ~ 12652406 (-) True G111862
TU165120 lncRNA downstream 400314 12567205 ~ 12624619 (-) False G111862
TU165116 lncRNA downstream 412939 12557811 ~ 12611994 (-) True G111860
TU165016 lncRNA downstream 534813 12489782 ~ 12490120 (-) True G111799
TU165036 lncRNA downstream 537240 12486851 ~ 12487693 (-) True G111809
TU165679 lncRNA upstream 161790 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA upstream 170749 13196878 ~ 13200640 (-) True G112256
TU165691 lncRNA upstream 187801 13213930 ~ 13227818 (-) True G112261
TU165689 lncRNA upstream 191074 13217203 ~ 13249624 (-) True G112260
TU165746 lncRNA upstream 263076 13289205 ~ 13292423 (-) True G112299
XM_043260696.1 mRNA downstream 49139 12947950 ~ 12975794 (-) True deptor
XM_043261932.1 mRNA downstream 80863 12839061 ~ 12944070 (-) False col14a1a
XM_043261934.1 mRNA downstream 81229 12839061 ~ 12943704 (-) False col14a1a
XM_043261928.1 mRNA downstream 81229 12839061 ~ 12943704 (-) False col14a1a
XM_043261930.1 mRNA downstream 81229 12839061 ~ 12943704 (-) True col14a1a
XM_043260517.1 mRNA upstream 16697 13042826 ~ 13048403 (-) True polr3c
XM_043260518.1 mRNA upstream 29268 13055397 ~ 13060927 (-) True gba
XM_043261648.1 mRNA upstream 34906 13061035 ~ 13066879 (-) False dap3
XM_043261646.1 mRNA upstream 34906 13061035 ~ 13066043 (-) False dap3
XM_043261647.1 mRNA upstream 34906 13061035 ~ 13066043 (-) True dap3
TU164609 other downstream 1613156 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1738501 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2141722 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2158505 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2276633 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 627931 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1208425 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1883196 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2442351 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2442351 15468480 ~ 15496375 (-) False rps19

Expression Profile