RNA id: TU165680


Basic Information

Item Value
RNA id TU165680
length 2691
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G112256
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13187919 ~ 13200640 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttcagaccTTGCGcttttgttactgtatttttttttatttcatttatattagacTCTGTAGTGAAAAAGGATGCCATTCAAAAGGAGCATTAAACCATAGAAACTCATTTTTTTAAGGATTAACAACAGGTTGATAGCCAAGAGAAGAGACCGATGCAATttcaaatgtgtatatatatatatatatctatatacgcTATATACTGAACATGTCATGAAAacctctgacacacacagacacggatGGTCCTTTGCAAGATGTCCTGATGATTATTGCTGCTTACATTGTGGCCATTGCATTGCAAATGGCAAAACGCAGTTGTATTGCTCAGAGCCAGCAGAGGAAACGGACACTAGCCCTCAAcaatttttttacactttttttttttttttttttttttctttctctttgatcatcaaaatgcattaacaatCAAATGTTTAtacagtgaatatatatattcatatatttatattatataaataaataatcatatagTATCAGAGGGTATACAAGGTTATACAGAATTGCCACTTATAAAATAGGGTCctgtcaaatattaaaaaaaagaaagaaaggtgaAGAAAAACTGCATAATCATACAAAGAAATTGTGCCATCGCCACTATGCATCTGTGACTAcatgtaacaatataaaaactcCAAAATAAAGTggttatacatttaaaaatagaccACTACTGTAACGTCAATACCATCTTGTTTCCACCAGCTATGTACAGCGTGACACTAGAGGGACAGGAAGTGAAAGAATCGGACGAGTAGATGAAGCAAACAGCTTTTTCTGTCTCTTACACCCAAACGACTCAATGAAAAATAATCAGTGTGAGTACAGGTTCCTTGAATGGGACGGGTTGGAGTGTGATTGACTGCCGCCGTAGCCAGTCAGCATGCTGGGAGAGTACTAGGGGGGTGGGGACTGCCTGTCACTCAAAGGCAGGTTCTCATAACCAGGGTTGCCATTGGAGGAAACGTTTGGAGTCCTgcatagagaaagagagaggcgcAGAGAGGAACCCGGAGAAGGTGGTGACAGAGAGACGGAGGAATGGCATGCCACACCAAAGGGACACAGGGAAGGATGAGAGCCAGGATCCAGGGAGGAAACAGGAAGAGAAAAGGTGGAAGAGAGTTAGAGAGATgtgacattttcactttttagaatctttagatgttttttccaaaaggacacaaaagatatttaaattgaGGAATGGTTTTCAGGAATATATCAATTTAGAATAGAtcacttgtatttatttttaaagacattcatttgaaagcacATGGAAATGTGAATGAAGTGAGAAGAAGTGTGGATGTCAGATctagttttataaataaaaaaacagcaaatatggCCTTTCAAAACAGAAtaactgaaagagagagagaaacagggaATGTTAAAAAGCagggagaaagaaaacagactgCAATAGATTTGAAAGAGTGATGTAGTTCGGACAGCATGGTTTTTGACAGCGGACAGAAATATCGGAGGGGCGGGACTTTACCTATATTGTGCATCGTCTCTGATTGGAGGATCTATGTCTGTCTTGCAATGACGGACAGACcgatagacagacacacagacagacagacctcTGGActgatgtctgttttttttgGCTAGGCTGTGCTTGACATGTAGacctgtctgtgtgtctgtctgtgtgtgcatgtgtttgtatttgtctgtctgtctgtgcgcTCCATCTAACACctgcctgtctgtgtgtgactGGAGCTTGATGTGTTCGACTACGTATGGGTGACACTTGTTTCTGCATTTTGATCTACATAAGCCTATAAATGTGTTTCATAGTGCAAAGGCCATTCAGAGTGAAACCTTGATGCACGGCTGCTCGTGAAGAGAACAAGAATCAGTGTATTTCTAAAACCTAAACTTACATGGAAGACTTGAAGTGCCActcaaaaacattcatcaattaatgaatgcaaatgtacaaaactgacaattattttataagacattttatatgatttaatatttaatgtttaaaaatgtacactaccattcaaaaaagtttttgaaagaagtctcaataacaaatgctgcatttatttgacaaaaacgtacagtaaaaacagcaataatgtGAACACGtttctattttcaaatatattttacaattttatttatcacaAGGCTGATTATTCAGCatcatcacatgatccttcaaaaataattctagtactctgatttgctgctcaagaaacatttcttattattatcagttgtGCCGCTTCatctttttgtggaaaccacaatgaattttttcaggattctttaatgaatagtacaaaacaaaaagcatctgAGATAGAAAACTTTTGTAAcactgtaaatgtctttacttttaCTTCTGATTACATTAAATAGTTGCTTAATTGTTATgatgattaatgattaattcagattaaacaaaataaaattatttgtgtaaataataacgtgtgtgtaatgtgtattaataatttgtaaatatataaatacacacaactgcatgtatatatgtaaggaaaatatgttatgtttatatattaaatatatgtgtatgtataatataaattatgaatataaatatatagacgTAAATACATCTacatatctttaaaatatatattgtatgtgtgtctttatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165647 lncRNA downstream 170749 13024933 ~ 13026129 (-) True G112229
TU165121 lncRNA downstream 544472 12567205 ~ 12652406 (-) True G111862
TU165120 lncRNA downstream 572259 12567205 ~ 12624619 (-) False G111862
TU165116 lncRNA downstream 584884 12557811 ~ 12611994 (-) True G111860
TU165016 lncRNA downstream 706758 12489782 ~ 12490120 (-) True G111799
TU165691 lncRNA upstream 13290 13213930 ~ 13227818 (-) True G112261
TU165689 lncRNA upstream 16563 13217203 ~ 13249624 (-) True G112260
TU165746 lncRNA upstream 88565 13289205 ~ 13292423 (-) True G112299
TU165763 lncRNA upstream 230504 13431144 ~ 13434295 (-) True G112315
TU165802 lncRNA upstream 240030 13440670 ~ 13447178 (-) True G112336
XM_043261894.1 mRNA downstream 25894 13162930 ~ 13170984 (-) True flcn
XM_043261899.1 mRNA downstream 34094 13158802 ~ 13162784 (-) False zgc:174888
XM_043261898.1 mRNA downstream 34094 13158802 ~ 13162784 (-) True zgc:174888
XM_043261054.1 mRNA downstream 39005 13152349 ~ 13157873 (-) True grwd1
XM_043262033.1 mRNA downstream 50464 13144049 ~ 13146414 (-) True atg12
XM_043260047.1 mRNA upstream 742 13201382 ~ 13204597 (-) True josd2
XM_043261089.1 mRNA upstream 105388 13306028 ~ 13319763 (-) True pitpnc1b
XM_043260540.1 mRNA upstream 272835 13473475 ~ 13485710 (-) True cacng6b
XM_043260533.1 mRNA upstream 286711 13487351 ~ 13494251 (-) False u2af2a
XM_043260532.1 mRNA upstream 286711 13487351 ~ 13494237 (-) True u2af2a
TU164609 other downstream 1785101 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1910446 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2313667 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2330450 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2448578 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 453420 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1033914 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1708685 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2267840 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2267840 15468480 ~ 15496375 (-) False rps19

Expression Profile