RNA id: TU165689


Basic Information

Item Value
RNA id TU165689
length 1743
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G112260
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13217203 ~ 13249624 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCCTGGTCGccattttattaatgaaaaagtaAGGAAGCTGAAGATACTACACGTGGTGGCACACAGAATAGGCACACATGACATGCAAAATAATCAACCTTAGTGTTTAGTGAATAAGAACAATAGTTTATTTGTGGTCTTGGAGAAAAAGACTACATTCCCCTGCATTACTTTGGCTAGGTGCAGTGTGGGTAACACTGATGCATTAGGGCATTTGTACATCAAAAAACAAGAGTCACAACACAAAATGTTCATAGTCATCCACATGTGGAAGTGCAGAAACTTAAAGGACTACATTACCCAAAATCCATCTGCAAAAAAGTATATGGTTAAAGAGGAGGCAAATTACTGGGCAAAAAAGGCAGTTAGCTTTAAACACCTACatgcaaaaaagagaaagacagcgCAAATGGTATGATGGTTCTTTATAATGCGAGTgtacaggaaaaacaaaaaaaaaatctatttattcaAGGGAAACATAGTTTGCGATCATCAAGGGCAccagttttttttcccagcattCCTCTGACACATAAATTGACCTGGCTGTCACAGCAACACTTCTTCTACGGCTGGTGTTGACGACGAATGCTTtaacaaacaggaagtgacaaGATCTCCGCGGCTGGGCGGAGACTTGCATTAAAATAGACAATAtcaaggaaacaaaacaacaaaaataattcatttgtaGTATTAAcaacaatagtaataatgatcagatcaataataattcataataagtGAAGTTACTTTAATGGTCGTTAAGGAAAGAAACAGACATGACTGGAGAAATAACAAGCAATCACGAAACTAATAGATTTTGAAACATTTGTACTGACACCGGTAATCAGGTTGTAAAAATTCAGTATCGTTCCAATAAAAGTAAGTGCATATACAGGTTGCGTCTACATGTCGACctgttttgaaatgcaatttcCAATGCACAGAATCTTTCTATACAATCAGATGCGAGACGTGTCCCATGTATTCAATCCATAGAGGtccaaattgtgtttttgcacaGCAAGAACAGCCTCTGCAAGTTCACTTAATATCTGCACACTGTGAATGtatgctgcttttttgtttgcaaCTGTGAGTCAGATTCCTATAAAAAGATGAGTACATTGTAGACAAGAGATAGCAACTTTAAGAAGAAAAGAATCTTACTGAGTTCaccattaaatgaaataaacaaataaaacgcaGATAAAATGTGATAATTAATGCATGTCTTTCTTTACCGTCTTCTTACCATCATAACATGTTCAGTTTTCCTTTGagaatgacaaataaatatcaGCAGTAGACTGATAAACAAGGTTCGTCCCCAAAGAGTTGAGATGCACCTGTCATTCCTCTCATCCGTGGTTTATCACAACTTAAGTGCTTGAATAAATCTATATTAACATTTCtatacaaatttaaatgcatattttttcttaGTATTTTACAGTTTCATTTCTCTAGAaagttattttcaaattttttttttctaaggttCTAGGCTTGATTCtgcccctctttttttttttttttttttttttttttttttttttttattgtacttttgttTCTGCAAAAGCGACAATAATGATCCAGATCAGTCTagattcatgaatgaatctTTCCTCGGGATTTGTTTGAACCAGTATAAAAGGTTCcttgaaaaaaaattgcctCAGAAGAATGATTCATCGCGAATCGGACCTCATTACCATGTTCCAGAGCACCA

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165679 lncRNA downstream 16563 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA downstream 16563 13196878 ~ 13200640 (-) True G112256
TU165647 lncRNA downstream 191074 13024933 ~ 13026129 (-) True G112229
TU165121 lncRNA downstream 564797 12567205 ~ 12652406 (-) True G111862
TU165120 lncRNA downstream 592584 12567205 ~ 12624619 (-) False G111862
TU165746 lncRNA upstream 39581 13289205 ~ 13292423 (-) True G112299
TU165763 lncRNA upstream 181520 13431144 ~ 13434295 (-) True G112315
TU165802 lncRNA upstream 191046 13440670 ~ 13447178 (-) True G112336
TU165793 lncRNA upstream 199883 13449507 ~ 13471686 (-) True G112327
TU165807 lncRNA upstream 205933 13455557 ~ 13461725 (-) True G112339
XM_043260047.1 mRNA downstream 12606 13201382 ~ 13204597 (-) True josd2
XM_043261894.1 mRNA downstream 46219 13162930 ~ 13170984 (-) True flcn
XM_043261899.1 mRNA downstream 54419 13158802 ~ 13162784 (-) False zgc:174888
XM_043261898.1 mRNA downstream 54419 13158802 ~ 13162784 (-) True zgc:174888
XM_043261054.1 mRNA downstream 59330 13152349 ~ 13157873 (-) True grwd1
XM_043261089.1 mRNA upstream 56404 13306028 ~ 13319763 (-) True pitpnc1b
XM_043260540.1 mRNA upstream 223851 13473475 ~ 13485710 (-) True cacng6b
XM_043260533.1 mRNA upstream 237727 13487351 ~ 13494251 (-) False u2af2a
XM_043260532.1 mRNA upstream 237727 13487351 ~ 13494237 (-) True u2af2a
XM_043260536.1 mRNA upstream 237727 13487351 ~ 13494231 (-) False u2af2a
TU164609 other downstream 1805426 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1930771 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2333992 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2350775 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2468903 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 404436 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 984930 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1659701 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2218856 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2218856 15468480 ~ 15496375 (-) False rps19

Expression Profile