RNA id: TU165746


Basic Information

Item Value
RNA id TU165746
length 3181
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G112299
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13289205 ~ 13292423 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGGTATCATATccagttattatattatatagtattatacAGAAAAATCTGACACCGCAATGCTACGATTGACCAAACAAATTCAAGTATTCCAGAAAGctgtgtaataatatataaaactatatttaaaaaaatcaatatgctGCAAACTAATGCATATTGAATCCTTCCAAAAGAAGACACATATTcttatataaatcataatattataCGTCAGTGCTTCTTATAAGCCTTCAACAATTTGACATATTTTCTTTGATCAAGTTGTATATTGAATTTGTCACGTTGTGTTAGTAAGCTCACACTCCGTGTCAAACATTCTGAGCGATCTAATTAACACATTCAAGTAATTAAAGCACAGAGAagctgaaattcagctttgcaaaaGGTAACACACATGAATAATGCATGGTTGTGAAAAGCGTATTTATTAGGATCACTGAATAGTTAATCAGTTGGTGTGAATTAATATGATTGGTGTGAAGTGTGTTTCAAATCTGTGTGAAGGGTTTTTCAAAAGGGTTGCCTGATGTATGTTTCATTTTTACCAAACATCATCTTCAAAAGCCGTCTCTGCTCAGATGATTTACAGTGTAGTTTAACACTAACCATGATCTAGACAGAAAAGCAATCAAGCTCCTGCTAGGTTCTAACTTTCAACAAATGTAGACTTGAAATGTTGGAAATTAAATGAACTTCACAGAGGCTCAGCCCATTTCTAGCACGAGCAAAGGCGGCTAGACTGAAAGCGCATAATAGGGCTTTATTGCTGACACCACACTACAGGAACATTATGGGCAGTGAAATGATTCACAGAGGCAGCCTAAGGGacgttgaaaataaaatgaaagcttaGTGATCACCATGACTGCTTAGAGTAATTTCATAAAAGGATATACTAAATTTACGATATTTAATAATAAGACATTTAATAGAATGTctgttaaaatgttcttcagatatcttaaagggaaagtttaGTTAAACATtagttactcaccctcatgttgtttcaaatgtGTAAGGCCTAGATATTTatgctactttttatttttggaactgcctgatttcatcaaaaatattaaaaagtaatttgtgtCCCAAAGGTGACCAAAGttcttgcaggtttggaactacatggAACTACTACTAATGACATAATTTGGggtaaaatgcttttaaagtctaaaaaatatatacaaacaatgAAACAGACACATGTGGGAAATCAATTAAGACTTTAATTATACTATTTTAAGTTTACTATATGACTTGTACATGGATAGTTGACAGAGTTGTAATAAATTACTCAATAAATATATCAGATCAAATACTTAATATGTTTGTTTCTGGGGTTGGTTAGTTGGTCATGTGGCTTAGAAACAATTGTTGTGATTTGTAgggttacatttaaaaaaaaactcatttgagAACAAAGTCCAGCTACACAAATGCTGTGATTCTCCAGCACACGTATGCATACTGAACTCAGGGCAATATATTTGATTATCAAACACACTGTCCTTTTTACACATACACTTTCACATATAAGACTGGGACAGAATAAAGagttaatgtttcattttgtttggacatttaaatgtgttgttttccTGTGCCCTTTCTTGGAAGCATATTGCACTAAGTAATGTACTGCGTTGTCCAGAGAAATGCATAAAAGCAATGGCCAGTCGAAAGGTCAAATGTCTGTAAACAACAATGGTAGACGATGTTATATGGGTCCCATTTAGAAAATTTAAAGAGTAGTGGTTGAAAGACGACTTCTTTAACTTCACACAGTGTTTTCTGGGTAGGCTGATCAATCAGCTCAAAAGCCTTTAGATTTTCTGATTTAATTACGTTAggcttttttaaaacacattttctcctGAGGTCCCAACCTAATTTGTGGTTTCAATCCCGCTGAAGGTGCATCCTGGCCTCAGACCAACATTATTTTGTACTATATTGGTGCCTAAAGGTAGCATGAGTTATTCTGCCCAGAAATCTCCAGAGGATCTGTTGTTGGGCCAATGCTTTTGGGTGAACATCAGTCCCATGATGCACTAGTCCAGATAAAGCATAACATAACTTGATACTAAATGGAAAAATGTACAGCGGTATAAACAGAAACAAGTGCATTTGGATGCTTTAGGCACCTCATTTATGGTGCATTGAAATTGTAGATACAGAACATGCTGGCAAGCGTGTATGcgccaacacaaacacacacacgcagataAAGCAGCCAAGAGAAGCGTGCTCACACATACAGGGAGTGCATACACTTCCCTGCAAATACACACAGATTGTTTGAAGCTCCCGCTGCTCTACACACTTGCCACATGCCGACAGTTTGTCTGGCGCTGAAGCAAGAGGCAAATCAATGGGGAAGCCCgcttttttgtataatatattcttttttcactttttaagcttttataaaaatacaagtgAAAGTGTGGCGTATGTGCACATGCTCTTTGTGGATCTTTCTGTACGAGTTACCAAAGCATATCTCTTTTTTCATTTCCCTCTTTCTCTCGACATTGCGTGGAGTAGAGGTTAGCAGTCAACACCAGTCAGATCTGTTTGGTCACATCAGTTGACAGAGATGAATGGATGCAAAAACAGAGGAACGAATGAAAGGATGAGGGGGTCTTCTCTCGAGGGTACACGATTTGAAAGGTGGTTAATTTCCAATCATGCATCCAATTACCCATAcgcacatacagacacacactacGTCCCCTTCCTCACCATTGCTCCACCATGAGGTCGAGGACTCTGTTGACGTTCAGGTCTGAGTCAAGGCCAAAATCGCTCTCTAGAAATGGGGCGGCGGGAGGCGTGAGCGGTTGAAGGCCAGAGGTCAAAGactccagccaatcagcagGGTCAAAAGCAGGAACCTCTGACCTTCTTTTCCTGGACAGTGAGCTGGATGGTGGAGTGGTGCAGATGGggggaggaggaagaggagctgGGGTTGAAGTGAGGGATGGATCGTTGTTAGGTGAGGGAGGAAGCTCTAAAAGAAGCGAAGAGCACAAAGGAgaggacaggaagttgtcgtcTTTTTGGCGCTTGGTGGACTGTGATTGGTCAGGCAGTGGGGCAGGGGAGGAGCCTGAAAGGACGGTGGTGGCTGACTGGACATCTGTGATCAGTGAAGAGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165689 lncRNA downstream 39581 13217203 ~ 13249624 (-) True G112260
TU165691 lncRNA downstream 61387 13213930 ~ 13227818 (-) True G112261
TU165679 lncRNA downstream 88565 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA downstream 88565 13196878 ~ 13200640 (-) True G112256
TU165647 lncRNA downstream 263076 13024933 ~ 13026129 (-) True G112229
TU165763 lncRNA upstream 138721 13431144 ~ 13434295 (-) True G112315
TU165802 lncRNA upstream 148247 13440670 ~ 13447178 (-) True G112336
TU165793 lncRNA upstream 157084 13449507 ~ 13471686 (-) True G112327
TU165807 lncRNA upstream 163134 13455557 ~ 13461725 (-) True G112339
TU165828 lncRNA upstream 242298 13534721 ~ 13543311 (-) True G112350
XM_043260047.1 mRNA downstream 84608 13201382 ~ 13204597 (-) True josd2
XM_043261894.1 mRNA downstream 118221 13162930 ~ 13170984 (-) True flcn
XM_043261899.1 mRNA downstream 126421 13158802 ~ 13162784 (-) False zgc:174888
XM_043261898.1 mRNA downstream 126421 13158802 ~ 13162784 (-) True zgc:174888
XM_043261054.1 mRNA downstream 131332 13152349 ~ 13157873 (-) True grwd1
XM_043261089.1 mRNA upstream 13605 13306028 ~ 13319763 (-) True pitpnc1b
XM_043260540.1 mRNA upstream 181052 13473475 ~ 13485710 (-) True cacng6b
XM_043260533.1 mRNA upstream 194928 13487351 ~ 13494251 (-) False u2af2a
XM_043260532.1 mRNA upstream 194928 13487351 ~ 13494237 (-) True u2af2a
XM_043260536.1 mRNA upstream 194928 13487351 ~ 13494231 (-) False u2af2a
TU164609 other downstream 1877428 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 2002773 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2405994 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2422777 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2540905 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 361637 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 942131 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1616902 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2176057 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2176057 15468480 ~ 15496375 (-) False rps19

Expression Profile