RNA id: TU165875


Basic Information

Item Value
RNA id TU165875
length 1577
lncRNA type read_through
GC content 0.39
exon number 2
gene id G112385
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13648627 ~ 13736231 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGTTAACGTCATccgtgtgtttttattatgaattttttaacagattatttCTTCAGACGGTTATCAATAACAATCAATCCATATAATCCATGTCATTGTGTCTATAAGTATAGTTAATCGTCCCAATGGTAACCATTGTAGTAATATAGCttattaatgcaaatttatCCATTCTTAATATcacactgcaaaaacaacagGCCTTTATTTACTGACAGGTTTCCACTGTACACTAACACAGACAGAGAAATAGTCACGGGAAAAAGAGAGGAGTGCGAGCTGGAAGGAGGAAGGGGTGGCACAGTTGTACATTCAGAAACCAAAAAAGCAGTGGCAGTATCTAAAGAGTGTACGGAGAGAGAAAAGACGgggaagaaaagagagagggaggatgATGGCGGAGGTGAGAGGTGTTCTAGGCATAACAATAATGTGCCTTTCTGTTCCACTGTGAATCAGATATTAACAAGTTTTTAAATTACACAATtgaacacacaaataaatagacATTCATCAAGCCAATCATTACCGCTCTTATTACTAATACTATTATTGTCATTATCACTGGATATTACCAATagagatattagaaaaaaatacctAGCCTATCTGAAAGTGCAAAGACCGAAAATGAACGGAAATAATGGAAccgacaacaaaaaaatgagaataatagtagtagtcatttgtatttacatacatttaagtACAATCAAAACTGCCCAGGTTGAGCTAACATTCTGATACAGCAGAGGGCATTGCactgtactgtgttttttgTGAGGTTGTGAGAAGAGGTGCacagatttgtgtgtgtttgtgtgtgtgtgtgtgtgcgttgtgATGCTTATTAAAAGAAAGCACTTGCATACCTAGCTGGAGTCTATCACTATTACGAAACAGCTTTACTGACTAGTCCTCTATATCTGTACATGTGAATTTGTTCAAGGAATGTATCAAGAGACAGATTGTGCAGAGGAAATACAGCTTCTGAAGAGGTTTTGTACACGGTGTACTGGGCACAAgacattatattaattacaaaagGCTGTAATCTGAAACATTCAGAGTCAATTAGTTGATATGAGTTGACAATTAGTGTTTTCATTATGTTCGATACAGTGTTGTGAGAACATCAATTGGAACGGTTGTAGGATGAATGGACATAATTGTGCCATTAATAAATATTGGGATCTGGGTTGAGAGTGGCAGAGAGCGAATGCGTTGTGCATTGTGGGAGCGTACATTCCAGAGAGAAGCATTGCATTCACAGAGGCTGAGATCCTATAACTGTGTCACTGGCGTGTTAGACACTTTGCATTTTCTTTGACGGTgcatctgtatgtgtgtgtgtttgtatattcctgtgttttaaatgagtggGTGGTGCTTTAGTACGTGAGTGTGGCTAATTGGCTCAGTAGCGTCTGGGGGCGGAGTCTCTTCCCTCTTTCTTGATGATGATTCGTTGGTCATCACTGGTATCGTCGGGCGAATCCACTACTTCTTCCTCGTCGTCACACTCTCCTTCCATATCTGTTGCAATTCCCATGCGGTTCTtattttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165864 lncRNA downstream 29291 13618687 ~ 13619336 (-) True G112377
TU165843 lncRNA downstream 39293 13606631 ~ 13609334 (-) True G112361
TU165828 lncRNA downstream 105316 13534721 ~ 13543311 (-) True G112350
TU165793 lncRNA downstream 176941 13449507 ~ 13471686 (-) True G112327
TU165807 lncRNA downstream 186902 13455557 ~ 13461725 (-) True G112339
TU165855 lncRNA upstream 41038 13777269 ~ 13778805 (-) True G112369
TU165896 lncRNA upstream 43764 13779995 ~ 13789086 (-) False LOC122360145
TU165894 lncRNA upstream 44252 13780483 ~ 13789086 (-) False LOC122360145
TU165895 lncRNA upstream 44252 13780483 ~ 13789086 (-) False LOC122360145
TU165897 lncRNA upstream 44252 13780483 ~ 13789086 (-) False LOC122360145
XM_043261420.1 mRNA downstream 43886 13592032 ~ 13604741 (-) True rasip1
XM_043261927.1 mRNA downstream 75032 13565402 ~ 13573595 (-) True il11a
XM_043261487.1 mRNA downstream 84400 13556250 ~ 13564227 (-) True znf628
XM_043261488.1 mRNA downstream 84728 13556250 ~ 13563899 (-) False znf628
XM_043261974.1 mRNA downstream 92664 13552540 ~ 13555963 (-) True nat14
XM_043260508.1 mRNA upstream 17183 13753414 ~ 13760343 (-) False gnb3a
XM_043260507.1 mRNA upstream 17183 13753414 ~ 13759310 (-) True gnb3a
XM_043260505.1 mRNA upstream 17183 13753414 ~ 13759272 (-) False gnb3a
XM_043260506.1 mRNA upstream 17183 13753414 ~ 13759267 (-) False gnb3a
XM_043260503.1 mRNA upstream 27773 13764004 ~ 13770786 (-) True p3h3
TU164609 other downstream 2236850 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 2362195 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2765416 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2782199 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2900327 10746793 ~ 10748300 (-) False LOC122361037
TU166030 other upstream 498323 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1173094 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 1732249 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 1732249 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 1732249 15468480 ~ 15495722 (-) False rps19

Expression Profile