RNA id: XM_043260560.1



Basic Information


Item Value
RNA id XM_043260560.1
length 1176
RNA type mRNA
GC content 0.38
exon number 5
gene id dicp3.3
representative False

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14498263 ~ 14503136 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTTAGCATCTGAACTGTAAACTGGTGATTTGGGCACTATTTCTAGTCTTTAGCCTGTTAAATTCTCCCATAAGTTGACGAAGCTTTTctgcttatataaaaaaactgccTCTGTGATCACAAGAAGCTACAAGCCGAAGGGAAGCTGATGATGTTCAAAGGACAGAAACAGACAATGGCTGAGAAGTGTGTCGTGTGTTTGCTGGGACTGATCATTCTCGGCTCACTTTTCACAGGTAGCAGTGGAGTGGATGATACTCATCTGTTCTATAGTTCTGGTGAAAATGTCCGTCTGCCCTGTAATAATGCTCTTTCTGACTGTACATCAACTACATGGATCTATAATAGAGATATAAATACAACTTCAATTGAACTGATGACATTAGGTATAACAAAGAATTACATCGAGAGACACAAGAGACTGAGTCTAGGCTCTGACTGCTCTCTAAACATCCAGAAAATCACAGAAGAAGATTATGGAGTTTACAGTTGCAGACAATTTGTAGATGAAAAACAGCAAGGAACTGATGCACGTGTTTATCTGCATGTTCTTCAGGtCACTTCATCATCCTCACAAACTGAGATCAGACCGGGCAGCTTTCTGTCGCTTTCCTGTCAATTACATACTGATGGATTTTATTGTGATACTTTGATCCACTTTCAAGGAGTTGAGCTGATCTGGGTGAATGAGGCCGGTGTGAATCTTCAGACAGACTCCAGATATAAGATATCATTCTCTTCAAAACACTGTAAAAGCTCTCTGACTACAAGACTCCTGAATGAAGATCTCAACAGAGAGTGGAGATGTCTGCTTACTCAGAGAAATGAAGTGAAAACCTCAGTCTCATATACTGTCAAGTATTCAGATGCAGAAGTCAATCAAACTGGATATTTAATCAGAGATCATCTGTGCAAGAAGAGCTGGTGAGTTCTGAATTTTACAGAATTTcaatttttgatgattttccCCTAAATTTGACAaccttcagaatattttctgctTGGGCATAAGTGACATTTGTGACATTTTGGgttaaatatatagataaaaaacattttattctatctttatgtatttgtattttatcatCCCTTGAATGCATATAGGTTTCATCAGAAATACAAACCCCAACCCATTaagggcattttttttttcaaagtactGCACTTTCATGCG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU166305 lncRNA downstream 1156 14498526 ~ 14498744 (-) False dicp3.3
TU166260 lncRNA downstream 171697 14327952 ~ 14328203 (-) True G112612
TU166037 lncRNA downstream 196365 14303124 ~ 14303535 (-) True G112483
TU166033 lncRNA downstream 203328 14292739 ~ 14296572 (-) True G112479
TU166022 lncRNA downstream 288961 14210693 ~ 14210939 (-) True G112474
TU166339 lncRNA upstream 79343 14582479 ~ 14583312 (-) False LOC122359961
TU166340 lncRNA upstream 79343 14582479 ~ 14583312 (-) False LOC122359961
TU166341 lncRNA upstream 79343 14582479 ~ 14587869 (-) True LOC122359961
TU166328 lncRNA upstream 88226 14591362 ~ 14654150 (-) True G112659
XR_006252747.1 lncRNA upstream 130078 14633214 ~ 14638332 (-) True LOC122359963
XM_043261505.1 mRNA downstream 16756 14476615 ~ 14483144 (-) True LOC122360687
XM_043261506.1 mRNA downstream 23429 14473014 ~ 14476471 (-) True si:ch73-86n18.1
XM_043261469.1 mRNA downstream 27782 14464588 ~ 14472118 (-) True cops7a
XM_043261511.1 mRNA downstream 54243 14433256 ~ 14445657 (-) False znf384b
XM_043260557.1 mRNA upstream 3047 14506183 ~ 14508585 (-) True LOC122360168
XM_043260555.1 mRNA upstream 7689 14510825 ~ 14515708 (-) True LOC122360167
XM_043260556.1 mRNA upstream 7689 14510825 ~ 14515668 (-) False LOC122360167
XM_043260558.1 mRNA upstream 14925 14518061 ~ 14524116 (-) True LOC122360169
XM_043260545.1 mRNA upstream 23709 14526845 ~ 14533075 (-) False LOC122360164
TU166030 other downstream 198281 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 815991 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3088123 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3213468 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3633472 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 406189 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 965344 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 965344 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 965344 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 989685 15492821 ~ 15496375 (-) True rps19

Expression Profile


XM_043260560.1 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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XM_043260560.1 Expression in each Bioproject

Bar chart with 2 bars.
XM_043260560.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.25.
End of interactive chart.