RNA id: XM_043260562.1


Basic Information

Item Value
RNA id XM_043260562.1
length 1981
RNA type mRNA
GC content 0.43
exon number 5
gene id dicp3.3
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14498263 ~ 14503136 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAGCATCTGAACTGTAAACTGGTGATTTGGGCACTATTTCTAGTCTTTAGCCTGTTAAATTCTCCCATAAGTTGACGAAGCTTTTctgcttatataaaaaaactgccTCTGTGATCACAAGAAGCTACAAGCCGAAGGGAAGCTGATGATGTTCAAAGGACAGAAACAGACAATGGCTGAGAAGTGTGTCGTGTGTTTGCTGGGACTGATCATTCTCGGCTCACTTTTCACAGtCACTTCATCATCCTCACAAACTGAGATCAGACCGGGCAGCTTTCTGTCGCTTTCCTGTCAATTACATACTGATGGATTTTATTGTGATACTTTGATCCACTTTCAAGGAGTTGAGCTGATCTGGGTGAATGAGGCCGGTGTGAATCTTCAGACAGACTCCAGATATAAGATATCATTCTCTTCAAAACACTGTAAAAGCTCTCTGACTACAAGACTCCTGAATGAAGATCTCAACAGAGAGTGGAGATGTCTGCTTACTCAGAGAAATGAAGTGAAAACCTCAGTCTCATATACTGTCAAGTATTCAGATGCAGAAGTCAATCAAACTGGATATTTAATCAGAGTGATTGTGATTATTGTTGAGATTACAGTGTTTGCTGCTCCTACTGTGATTCTTTTACAGATCATCTGTGCAAGAAGAGCTGAAACCAGCGTGTGACCGCTTAGCCTAACATTCACGGCTCAGACCCACTGCAccagaaagagtgagagagggagagagagagcaccGGGGCGCTGTTTGATATTTtcactgatttatttactttctttaattaattaaaccaCCCTCTGGGGTTTTTGTTTGAGCCACCAAAATGCTGCCTAAGATGACGGCCGCAGATGACGTCGAAGCATACCTGTGGATGTTTGAAACGACTGCCTCGGACTGTCTTCCATCTCGGGCCTAACAGTTGTTTAATGACTGGGAATATAAACCTCTGGTGCCAGCCCGAGCACAAGCCGCCGAACTCTCTCGCCTGGCCCAGCACTGGCTGTTAGAGGGCCCTGTCAGCCAGTCATGTGGCAGAGAGTGTTGTGGTCGATCGGGTCCTGTGGGCCCTTCCCTGAGCGCACCGTCACAGTGTGCATGCAGATTTCAAGAGGCCGTCAAACTGGCGGCTATGGTTCAACACCACTGCCATATACCCAGAGGGTGGTCTATAGCTATATTTTGATATGTTCTGACTATATCCAGCCTATTACAGTAACTTCAGATGAACAGCACCCATGAAGGGATGGTTCTTGAGTGGACTCCAGATTAAGccaatttgaaaaacaaaaaaaacctgtcaaATTTGATCCCATTGtaatcaacatttttatcattttttaaatatcctaTATGATTGTAGAGTCGACTGCGATTAACCCATTCATACATGCTAAAACCCAGGCTAAAATGTCATTCACCTTATCAAATGCTGAACCATTACAAGGTCGAAATCAAAACCAATATACATAACGCGGAGAAAGATAGAAGAGCGTGCCTGCCAGGAAAAGTGTCAAGCACAATAAGGCATGGTTATTAAACTCACTTGTCGGCCAACAAAGCCACACAAAGAGGGTGGGCGGAAGGAAAATGGGGCCTAAAACTGCAACAAACACCTAAACCACCAGCCAGGAGGAACAGCAGTCTCCCAGAGGGGAGTCACATACCTGAGCTACCGGTACGAGGCGCTTATATGCGTAAACTGATGCTAATTATTAACGTCACAACCAGCAGCAATAACGCATGCCACATGAATATCATATATGATTATTACTTTGATACGGTTACACCTGTGAACATAAATCTTATCtgtagaaacattttttataaagctgcttttaagcaatgtataaaataaaaagttctatACAATTAATTGTACGGAAATTCATTGAATAAAACTTGCCCACTGGAACTACTTGAAGTCTATGTGAATTATGTGATGATCAAGGATATTGAATTTCCATGTCACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166260 lncRNA downstream 170060 14327952 ~ 14328203 (-) True G112612
TU166037 lncRNA downstream 194728 14303124 ~ 14303535 (-) True G112483
TU166033 lncRNA downstream 201691 14292739 ~ 14296572 (-) True G112479
TU166022 lncRNA downstream 287324 14210693 ~ 14210939 (-) True G112474
TU166021 lncRNA downstream 287730 14208396 ~ 14210533 (-) True G112473
TU166339 lncRNA upstream 79343 14582479 ~ 14583312 (-) False LOC122359961
TU166340 lncRNA upstream 79343 14582479 ~ 14583312 (-) False LOC122359961
TU166341 lncRNA upstream 79343 14582479 ~ 14587869 (-) True LOC122359961
TU166328 lncRNA upstream 88226 14591362 ~ 14654150 (-) True G112659
XR_006252747.1 lncRNA upstream 130078 14633214 ~ 14638332 (-) True LOC122359963
XM_043261505.1 mRNA downstream 15119 14476615 ~ 14483144 (-) True LOC122360687
XM_043261506.1 mRNA downstream 21792 14473014 ~ 14476471 (-) True si:ch73-86n18.1
XM_043261469.1 mRNA downstream 26145 14464588 ~ 14472118 (-) True cops7a
XM_043261512.1 mRNA downstream 52605 14433256 ~ 14445658 (-) False znf384b
XM_043260557.1 mRNA upstream 3047 14506183 ~ 14508585 (-) True LOC122360168
XM_043260555.1 mRNA upstream 7689 14510825 ~ 14515708 (-) True LOC122360167
XM_043260556.1 mRNA upstream 7689 14510825 ~ 14515668 (-) False LOC122360167
XM_043260558.1 mRNA upstream 14925 14518061 ~ 14524116 (-) True LOC122360169
XM_043260545.1 mRNA upstream 23709 14526845 ~ 14533075 (-) False LOC122360164
TU166030 other downstream 196644 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 814354 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3086486 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3211831 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3631835 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 406189 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 965344 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 965344 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 965344 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 989685 15492821 ~ 15496375 (-) True rps19

Expression Profile