RNA id: TU166341


Basic Information

Item Value
RNA id TU166341
length 3217
lncRNA type sense_over
GC content 0.38
exon number 10
gene id LOC122359961
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14582479 ~ 14587869 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGAACGTCGTGCGGACGGGAGGCGTGCACTCCAGCTGGGGACTTAGCTGGGCACGCGCTTGGCGATACACTTTCATTCAGCCAAAGCCGCTAATGCAGCAACATCATGCGTTCCGCGATATCATTTCTTGCCTTTTTTTCGTGCGTTTCACTCGTCGAGATAAAGTCACTCCAAGCAGGTGAAACGTGTGTCGGTATCCGGAGAGAAGACTCATCCTATGACTTCGAGCTTCCTGACGCTGTAGCCGTGAACGCGCAGGACCCCGCGTGCGACGCGGAGTGGACCCTTGATGTAAATATCTCTAAAAAGGCCACGATTAACttgaactttttaaatatgagaaTGTTATGTATTTCCCTGTGcgataaattacttttatttaatgtaatttaatgttattttatgtgttatttAACCACAAGAGGTCACTATCGTCGTAGTTTTGTGAtgtgttctttttaaaatggcCACTATAACACCAAGTGGCCATTAGGTTTCATGTTCTATGCATTACATCAAAATGTTCCATAATATGCGATAACTGCCATCTagatttgatttagattataCCACTAGTTTAATATGAgccattttctgtgttttgtgttaccATTTGtcactgttaaaaatgttttgttttgtcttgtacTAGACATTAgtgaaaacaagcaaaatgtaAAGTTGTGAAAGTTTTACCATGATTACTAAATGTCTCACATTTCTCTACTAGCAATTCACTGCAATCCTAGATAGAAGGATTGCTCACTTTTCTCATCCCTTCAAAAACGTAACTAATCGAGGAATAAGTGTGACTTACTGTGCAGCTTTAGTCAAATGCCACATCTCTTGTCCAACGTATACCAATCACCTCACATGTTCTTgcacaAATTTCACCAGCAATCCAGTTCTTAACACAAAGCTGCCAGATATGTCTTCTGATGCCAACAATAGTGATTCATCAGTGAGGCAACACTATTGTGCCGTTGCTGTTGCTGCCACTTTTGCTCTAAGCCTAGTCATTTTGGCTGTCCTTATCTGCAGGACACAACAgCAATGCAAAATATGATCCTACAAGAGACTGAggtttcaagatgtgctgttcaagctcttttgaaaAAGAAGGCTGGAGAGCAGTACCataatgagtgtctgcaggcaacagtgaagcatggtggaggttccttAAACGTTTCGGActctcaatgctgagaaatacaggcagacACTTATCCATCGTGCAGTACCTTCAGGGAGGCGGGACAACTaccccaaacatacagccataatcattaagaactatcttcagtttaaagaagaagaagaagtactggaagtgatggcatggcgACCACAGAGCCCTGATTTCAACATCATTGAGTGTGTCTGGGActacatgaagagacagaaggatgtgagaaagcctacatTCACAGAGGATCTGTGGTTAGTCctccaagatgtttggaacaacctgcCAGtcgagttccttcaaaaactgccAAGTGCacctagaagaattgctgctgttttgaaggcaagGGTGGTCACTAGatttgattttagatttttgattagttttaattaaatcattatttatatttctggaagcatttgtttacagcattttgtcacacctgcctaaaacttttgcacagtactgtatatgttcaaaaaatgtttatattaataatgataatatatacataaataaaaatctaaacataacCGTACATATTCTATaggttaaatataataataaaatgtataaattatgatGAAGGCAGTGACGTATGAGCACACAGGCTGAATACAAATGATCAGAATTGATAGACAACTTGGCTATATCAGGGAAAATACATCTACATAGTCCTTCGCAGAgaaagggaaaataaaaaaacatcactttcAGGCAATAAGTTCATAATCCTGTGAAACTTTTTAATGTTGGTATTAATTTCACCATCGCCAACAACGCAACTGACTCAGTATAGTTTCCATGACctgaaatgtattatataaaaacatcgAGGCAATATATGGAATATGGTTTAAATATGGTTTCATTGAATGCGACCGTTAATATACATAATGTAggataatacaaaataaacaatttactTTGTATTTTCTCCCAGAATGTATAATAGCTCCCTGGCTGTCACATGTTACTGTTTTTCACATAGTTACGACATGATGTTACTGTGTCTACAAAGTGTAATGGTAAAGCTCATGTTGCAAGTTGTTTAAATCTTGCTTATCTTAATCTTAATCTTGTTTTATAGAGactttcttgtttatttttacggTTTTCCATCCTTGTAGCTCTTATTTAATCCTTGTGTTATAGGATGTAAGTTACtttgaaacatttctttgaATTGACGATAACgactctttcttctttctgtatAGATATATAGCTAAGTAATATCGTTAAAATGAATCTCACTTACCGGTGAGCACCAGCTTCGCGCGctatctgtgtctgtttgtaGTTTAGATTCTCAACGGCTCCGTGCTGTCATCTGTTCCCATGGGTTATATGaggaaataaacatttcatcatAAATTATAGGCTATAATCCATCGTAGCTCACTGAGACGTGAGCCCATAAACGCAGATATTTATGACTGATGTATTCATGTTTGCATAAAACTCCTGTATAACGTTAAACACAATCTAGTTTGAACATCGCGTTAGCAAAAATTCTAGTAATGTGAAAGCtgatacaataataattaaaaaaaaattgtgaatttgaTGTTATGAACATAAATGTACCCGAGCgacttttttataaaatgtgtgcatACGGAAGCGTACGTTTGTTGCTTAGCAACTGAATGCGTGACGCACGTCAACATCAGGTGCTTAGTGACGCCGGCGCAGAGACGCAGAGATGGCGGAGAGAAACACTCTGGAAAAAGTCGATTTGGGCGCTTTAAGTCCAGAGCAGCAGGAGAAGCTGCATCAGTTTAAGGTCAAGACACGGATagctaatgaaaaatatttaacgaCTCATCCGGAGGTGGAAATGTTACTGAGCGGCTTCTTAAGGGGTGTGTTTCTAAACAGGCCTACAGATATTCGTGAATTTGCCGCAGATCACTTCTGCGACCCAGGATTGCCAAGGAAAATTCAGGAGCAAATGAATATgcagaaaaagtgaaaaaagtggatagtgttttgtaataaaagagagaaaaaaattgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166305 lncRNA downstream 83735 14498526 ~ 14498744 (-) False dicp3.3
TU166260 lncRNA downstream 254276 14327952 ~ 14328203 (-) True G112612
TU166037 lncRNA downstream 278944 14303124 ~ 14303535 (-) True G112483
TU166033 lncRNA downstream 285907 14292739 ~ 14296572 (-) True G112479
TU166022 lncRNA downstream 371540 14210693 ~ 14210939 (-) True G112474
TU166328 lncRNA upstream 3493 14591362 ~ 14654150 (-) True G112659
XR_006252747.1 lncRNA upstream 45345 14633214 ~ 14638332 (-) True LOC122359963
TU166357 lncRNA upstream 47694 14635563 ~ 14637393 (-) False LOC122359963
TU166370 lncRNA upstream 127347 14715216 ~ 14715491 (-) True G112686
TU166909 lncRNA upstream 304171 14892040 ~ 14892395 (-) True G113034
XM_043261481.1 mRNA downstream 1237 14568314 ~ 14581242 (-) True otoa
XM_043261381.1 mRNA downstream 25414 14544847 ~ 14557065 (-) False setdb1b
XM_043261380.1 mRNA downstream 25414 14544847 ~ 14557065 (-) True setdb1b
XM_043260549.1 mRNA downstream 37737 14540215 ~ 14544742 (-) False LOC122360165
XM_043260201.1 mRNA upstream 56019 14643888 ~ 14650892 (-) True il6r
XM_043260197.1 mRNA upstream 63704 14651573 ~ 14677758 (-) True atp8b2
XM_043260203.1 mRNA upstream 94959 14682828 ~ 14688168 (-) True aqp10a
XM_043260200.1 mRNA upstream 99862 14687731 ~ 14697088 (-) False si:dkey-92i15.4
XM_043260199.1 mRNA upstream 99862 14687731 ~ 14694809 (-) True si:dkey-92i15.4
TU166030 other downstream 280860 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 898570 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3170702 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3296047 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3716051 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 321456 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 880611 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 880611 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 880611 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 904952 15492821 ~ 15496375 (-) True rps19

Expression Profile