RNA id: TU166915


Basic Information

Item Value
RNA id TU166915
length 704
lncRNA type intronic
GC content 0.40
exon number 2
gene id G113039
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14946595 ~ 14947384 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTTGCAGCATTCAGTCCCCCGTGTCCTTAGAAAGCAAGAGCACAGACGGGGTGCACTCTGGGATTTGTAGTTCAGCTAACTCTTCCTCGTAACCCTGAATTCAGGTCACTCGACTGAATGACTCACAAATCAACCCTGTAGTTATTCCGACACATCGATTAGACGCTTATTGCATGGTCGGTTTGGATTTGTAAGCGCATATACCAAGATAACCTTGAGGTTGCGTCAAATGacctgcattttgtttttgctctgcATTGGCTCATTGATATGGTTGAAGATGGTTCAGACAGAAATTAAATTTCTGTCAttgccctcatgtcattccaactgaatgagattttatatatatatatatattagtcagtGCAGTGGGGTTTAATTTAGTGTTATTTTGAACCTCATTGTCTTTCATTATATGGACAAAATGCTAAGTCATGTTTAAAAGGACACAAGTGGAGTAAATTAATgaccaaattttcatttcaaggTGATATGTATCTAGTGTCGGAAATATGGACAAAAAGTGGGAATTATGTGGAAGATTATAGAATATCAAGAGGAAGTAGAGAGAAATGACTAGCCGCCAACTTGCTTGCTCTTAAGTTACCATGGGAGGAGCGTTGAGGACAGACCTCATGCTCCTTATCCGCTTTTTCCCTCCATCCATTGATGcgcttactctctctctctcatccccCA

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166910 lncRNA downstream 41688 14899182 ~ 14904907 (-) True si:ch211-105c13.3
TU166911 lncRNA downstream 41688 14899182 ~ 14904907 (-) False si:ch211-105c13.3
TU166909 lncRNA downstream 54200 14892040 ~ 14892395 (-) True G113034
TU166370 lncRNA downstream 231104 14715216 ~ 14715491 (-) True G112686
TU166328 lncRNA downstream 292445 14591362 ~ 14654150 (-) True G112659
TU166926 lncRNA upstream 23221 14970605 ~ 14988931 (-) False si:dkey-246i14.3
TU166958 lncRNA upstream 163449 15110833 ~ 15197354 (-) False G113073
TU166979 lncRNA upstream 217613 15164997 ~ 15165440 (-) True G113090
TU166987 lncRNA upstream 220989 15168373 ~ 15170070 (-) True G113092
TU166957 lncRNA upstream 237754 15185138 ~ 15186435 (-) True G113073
XM_043262066.1 mRNA downstream 165 14927037 ~ 14946430 (-) False shc1
XM_043262065.1 mRNA downstream 166 14927037 ~ 14946429 (-) True shc1
XM_043262069.1 mRNA downstream 19699 14926292 ~ 14926896 (-) True LOC122361105
XM_043261042.1 mRNA downstream 22078 14913948 ~ 14924517 (-) False pbxip1b
XM_043261039.1 mRNA downstream 22078 14913948 ~ 14924517 (-) False pbxip1b
XM_043261164.1 mRNA upstream 23157 14970541 ~ 15015462 (-) True si:dkey-246i14.3
XM_043260338.1 mRNA upstream 199640 15147024 ~ 15150068 (-) True si:dkey-247k7.2
XM_043260021.1 mRNA upstream 204360 15151744 ~ 15163625 (-) True trim46a
XM_043260023.1 mRNA upstream 206934 15154318 ~ 15163625 (-) False trim46a
XM_043260022.1 mRNA upstream 206934 15154318 ~ 15163625 (-) False trim46a
XR_006252733.1 other downstream 32949 14909325 ~ 14913646 (-) False LOC122359907
TU166030 other downstream 644976 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1262686 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3534818 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3660163 11270664 ~ 11286432 (-) False G111450
TU167048 other upstream 521096 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 521096 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 521096 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 545437 15492821 ~ 15496375 (-) True rps19
TU167155 other upstream 869595 15816979 ~ 15819086 (-) True G113203

Expression Profile