RNA id: TU167053


Basic Information

Item Value
RNA id TU167053
length 2122
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G113138
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15402327 ~ 15406083 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACAAATAAGTTGTGTAGTAGGACACAcatttattgaaaacaaattcaaatacAACAGTGCACAAACATGTAAAGTAAACAAGGTTTTATATGTGGATTTGTGGCTAACAAAGCTCATCTTTGCATAAATTCTGATTTAGCTCAGCAGCTGAAGgcactttttgtgtttattttgaatagTGCCATGTTGGCCCCACTAACTAGAAAACAACTAATAGAGAACTGCCAAAACAGGATGATTGatcttaaaatgtcttaaaatgtactgtatgctAAAGAAAGGCACTGAAAGTATATCCTCAGACAGTGGGTTAATACTGAGAAAGTAAACGCGGTGAGTACATGGTATTCTTTTGCCCAATAATGGACAGTGCTAGTCCAGTCGAGTCCAGTTCTTAACCACTTATCAACCTCTCACagaataaaaaagcatttttcagtAACACAAAACCTCCTTTCTTGTTTCTGTTTGGTGTTAACACTAGATAAGTGTGGAGCTCTTAAGCTTGAGTGGGAATAGCTGCTGAGGCCTCCTTGATCTTGTCCACAACCATCTGCAGCTGCTCACGGATCTTCTCGGAGTAAGGGGCGAGAAGGCTGGTCAGCTCATCCACTCGGCCCTCTAGGGACGTGCGCAGCTCCTCTGCGGTCTTCTCCAGCTTCTCCTTCAGAGCTCCAGCCTGGACTTCCAGCTGCTCGCCGACCTCCTGCGCCTGGGACTTCATCAGCTCGCTGAGGGCATCCAGTTTCTGGCCGGCACCATTTTGGGCCTGGCTGGCGTAGTGCTCGAATTGGCCCTTCGCGGCTTCAGCGTTTTGGGAGGCACGGGACTGCAGCTCACCCAGGTAGGTCGCCACGGTTTGCGGATCTCCTCGGTGTCCTTGTTCAGGCGTTTCTTCAGTTTGCGGGTGTAGGTGTTGACACGGTTCTTCACGTCATCTGCGTTCTGCTCCATCATGGTTTTTAGCTCTTGCAGGTACTGAGTGGAGCGTTCCTTAGCGTCGGTCATATCAGTTTGCAGTTTGCCAGCCAAGAGCTGGAGATCTTTGTTGAGCTGGCTAGCAGCGTCAGAGGCGTATGGAGTCATCTGGGTTTGAAGATTTTCGCTGTAGGAGCTCAGCTCAGCCATGGTGTCACTAATCAGGGTCAAGCTCTCTGCTGAGCTGGGAGCTCTTGATGTTCTGGACCACACTGTCAGTGTGAGTGTTGAGTTCAGACACATACTGCCAGAAGCGGTCCACCGTTTCCTCCCATCTGGGCTGAAGGACATCAGCCTGGAACAGGCTACGAGCCTGGCAGCCTGCAAGGGGTGTGAAGAGATTGTGAAGTTTACACTACATTAAGTTATTCACAAATGAGCAAGCTGCATTATTTCCAGTAACCTGCATTAGTTGTGTAATGCAATACTTGATAAAGATGCATTGCAAGCATAACATTGAGCATTCATATtccaaacagacagaaaaaataaaccaCGAGTGAATGGAGATTTTTTTCATACCAGTAAAAACAGCCAGAGCAAAGATCACCACAAGAGACCTCATTTTGATGGGCAGACAAGTACACCTGAGGAAAGATCAAAACAGGAGAAATCAATATGTCTTGAGCACTGCAGGGCATTCAAATATCAGACCTTTTATTCCCTTCAAACTTTGGAAATGAAAACCCATAAACGTATTTAATCACATGTAGTCTTTCAATCTAAACAGTGTGATATCAAAAACCTgtcttaaaatgcacaaataaatggcATCTGAACATGCGAGTAAGCTACTTTCTACATTAACACGCGATTAAATACTACACCATTAGTTAGCTGGAAGTTTATCAGGTAATCGAAAAACTCGTTCTCCAGCAAATAAAACCGTTCAGTAATAAGTTTACGACTACCCTGTGAGTGAAGAGCAAGTGTTTCTTACCTGAGACGTGTAATTTTCTCCGTGTAGAGGGAGTGTGGATGTCAGGTCTTTTATACAGTCCCGGGACGCACCCGCTGCATTCACAATCTCAGCCACGTGATCTCTCCTTTGTTCGGGGCTCGCGCATCATCCCACGCGTCACTGACCGCAGCAAGTGTGCGAAGTCCGCATCTTTCGGCACCAGCTGGAGATAAATTGCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167066 lncRNA downstream 4662 15381431 ~ 15397665 (-) True G113149
TU167073 lncRNA downstream 10180 15381431 ~ 15392147 (-) False G113149
TU167075 lncRNA downstream 16547 15381431 ~ 15385780 (-) False G113149
TU167076 lncRNA downstream 16547 15381431 ~ 15385780 (-) False G113149
TU167086 lncRNA downstream 32362 15369440 ~ 15369965 (-) False LOC122360651
TU167055 lncRNA upstream 3321 15407948 ~ 15412843 (-) True G113139
TU167043 lncRNA upstream 4704 15409331 ~ 15411013 (-) False G113136
TU167042 lncRNA upstream 9319 15413946 ~ 15428662 (-) False G113136
TU167091 lncRNA upstream 14279 15418906 ~ 15420427 (-) True G113151
TU167092 lncRNA upstream 14279 15418906 ~ 15420427 (-) False G113151
XM_043261447.1 mRNA downstream 27023 15365188 ~ 15375304 (-) False LOC122360651
XM_043261446.1 mRNA downstream 27025 15365188 ~ 15375302 (-) False LOC122360651
XM_043261445.1 mRNA downstream 27025 15365188 ~ 15375302 (-) True LOC122360651
XM_043261448.1 mRNA downstream 40187 15355634 ~ 15362140 (-) True LOC122360653
XM_043261692.1 mRNA downstream 59556 15342331 ~ 15342771 (-) True LOC122360842
XM_043260915.1 mRNA upstream 26193 15430820 ~ 15476204 (-) True bcam
XM_043260916.1 mRNA upstream 26193 15430820 ~ 15476203 (-) False bcam
XM_043260093.1 mRNA upstream 88321 15492948 ~ 15496413 (-) False rps19
XM_043261113.1 mRNA upstream 101432 15506059 ~ 15627109 (-) False cadm4
XM_043261112.1 mRNA upstream 101432 15506059 ~ 15546442 (-) True cadm4
XR_006252733.1 other downstream 488681 14909325 ~ 14913646 (-) False LOC122359907
TU166030 other downstream 1100708 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1718418 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3990550 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 4115895 11270664 ~ 11286432 (-) False G111450
TU167048 other upstream 63853 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 63853 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 63853 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 88194 15492821 ~ 15496375 (-) True rps19
TU167155 other upstream 412352 15816979 ~ 15819086 (-) True G113203

Expression Profile