RNA id: TU167055


Basic Information

Item Value
RNA id TU167055
length 993
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G113139
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15407948 ~ 15412843 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTACCGTTatcaatgtttattaatatggtgttaaaaagaaacatacagaaaaataactatattaatTTATAGTCTTCATATACATTTGGTCTTCAGTTGTGCATTAATGGCATGACTACATTGGAGATATGATTCGGTTTATTAATTCCACAACGTCTATATCCTGAAAGTCGCGATCGGCCCTTGAAGAATTGCTTTACTTATTGTTCTTGGGTTGCTCTGAAGCTGGGCATTCTGCTTTTCACTCTATCCCACAGGGAATTTGCATGATCTTTTGCCCACTCCACGTAAGGGTCAGCTACAGGTTTGAGATGTTCCTCATAGTACATGCCAGCAAAGCCAGCCACTGTGCTGCCAACGTTTAGAACTTTAGTCTTTGTGTCcctgcaaaaaaacacacaaatgaacaCAGAAGTAGAACAAAATGTACAACAAAATGTTCACTcgttaaatgcatgcattggGCGAATTTTACGTGAGAATGTAGCAGCTGATGAACAACATACCTGTATGCTTGCTTTGCTCTCTCAAGAAGTCCGGCATTGTTTGGAGCAGAAGTGGGCAATGGCTCGGATGATGTCAAACGCACTAAGGAACCATAGATTTAAAGACTTCTGTTGCATGATAGCGATATTTCAGTTCATATATTGAGATACATATAAatcagttaataaaatatacGTGCATATTTAAATCCAGACCTTGCAATGTCACAACcagaacaaagaaaatcaaTCTGGACATCTGGAAGAACAATCAACTGAATTAGATTAGATCATCACATTACTATTTAGATCTGGAATTGCTTACATGTACATTATTACAGTAAACCTTAAACatatatagtaaatatgtaCCTTTGGCGTTAATGCAGCGGAAGCAACTGTAGTCGTTTTTCTTCAGAAGAAGTACCAGCTGGATATCAGAGACTtttgtaaagctttttttttttttttttttttttttttttttttttttttttttttttttg

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167054 lncRNA downstream 1865 15402327 ~ 15406083 (-) False G113138
TU167053 lncRNA downstream 3321 15402327 ~ 15404627 (-) True G113138
TU167066 lncRNA downstream 10283 15381431 ~ 15397665 (-) True G113149
TU167073 lncRNA downstream 15801 15381431 ~ 15392147 (-) False G113149
TU167075 lncRNA downstream 22168 15381431 ~ 15385780 (-) False G113149
TU167042 lncRNA upstream 1103 15413946 ~ 15428662 (-) False G113136
TU167091 lncRNA upstream 6063 15418906 ~ 15420427 (-) True G113151
TU167092 lncRNA upstream 6063 15418906 ~ 15420427 (-) False G113151
TU167104 lncRNA upstream 252393 15665236 ~ 15672119 (-) False fxyd6l
TU167105 lncRNA upstream 252393 15665236 ~ 15672119 (-) False fxyd6l
XM_043261447.1 mRNA downstream 32644 15365188 ~ 15375304 (-) False LOC122360651
XM_043261446.1 mRNA downstream 32646 15365188 ~ 15375302 (-) False LOC122360651
XM_043261445.1 mRNA downstream 32646 15365188 ~ 15375302 (-) True LOC122360651
XM_043261448.1 mRNA downstream 45808 15355634 ~ 15362140 (-) True LOC122360653
XM_043261692.1 mRNA downstream 65177 15342331 ~ 15342771 (-) True LOC122360842
XM_043260915.1 mRNA upstream 17977 15430820 ~ 15476204 (-) True bcam
XM_043260916.1 mRNA upstream 17977 15430820 ~ 15476203 (-) False bcam
XM_043260093.1 mRNA upstream 80105 15492948 ~ 15496413 (-) False rps19
XM_043261113.1 mRNA upstream 93216 15506059 ~ 15627109 (-) False cadm4
XM_043261112.1 mRNA upstream 93216 15506059 ~ 15546442 (-) True cadm4
XR_006252733.1 other downstream 494302 14909325 ~ 14913646 (-) False LOC122359907
TU166030 other downstream 1106329 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1724039 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3996171 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 4121516 11270664 ~ 11286432 (-) False G111450
TU167048 other upstream 55637 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 55637 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 55637 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 79978 15492821 ~ 15496375 (-) True rps19
TU167155 other upstream 404136 15816979 ~ 15819086 (-) True G113203

Expression Profile