RNA id: TU167066


Basic Information

Item Value
RNA id TU167066
length 2428
lncRNA type inter_gene
GC content 0.38
exon number 5
gene id G113149
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15381431 ~ 15397665 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aacagaccgtacagaaaaaaaatgtatttcaaagaaacaacttaatatatattttattcatcacaATTTTagacaaaaagaagaaatgtttcaacAATTAGACTATGACAATGATTTCTGTAAGATCACTTGAACCTGAAAACTGCACAACCAGTAACTAGTAGGTCACTAAAGCATTTGACTGAATTTCCAAAAACGTGTTTCCAGATTGCATCAGCTACCATGAAAGCAATATAATTGTATTACTGTGTCTTTGGTAGGCTTTTGTCTTTCAAACCCATTAAATTCacaatttataatttatcataATTTCTGTCATCTGAACCTcttttacttaatatatttacttgaagcaataaataaaataaatattttaaaaaaatcatatttgcatGGTCTCTGAATTTGTTTATGGTCACATGACATCCAAATATATTTccttagtatattttaaaattatttatttagaatttacatttttatgactgaattaattattagctcaaaatgtgtaatttagtACAGATTAGCACATTAGTACattaattttgtaatgtaatttggAACAGACTACAATTTGTATGTCATCTACCCAGTttttggaataaattatattaaaaagaaattagtttaaaatgtaatactatttcacatttttactgtttttactgtgtctTGGAACAAATACCAGATGCCTTGTTAAATATAATGGccttctttttaataaaaaaaaccccaaaccaACACAAAGCCTGACCAGGAAAGAAATATTTAGACTTATTTCctttgacaaaatatttatttaatttaaattaaaatgtttcaaacatCACATAAAAATCAATGTAGATGCACATGATTGGACCTTTGTGTTTTGTTACATTGGCATGAATAAATACTTTCCATCAGGTCACTGTAAGGTCTGCAGCAGTTGTTAGTGTTAACCACAGACAGTGAAGaacatattttcacatttaacagAATCTAGTATCTAATTACATTAGCAGCAGTTGGCAAAAGTCTGTTGGTAGCATCTAATTTCTCTTGACGAAGGACTCGTACAGGGAGGTGAGCTGGGCCTGCAGGTCCTGAGCGTAGGGATCCAGTTTCTCCTTCAGGTCTTCAGCGTAGGGTGTGAGACTCTGCTGGACCATCTGGGCTCTCTCTCTAATCTGAATCTGGAGGAAAACAAAGATCAAATATGTCAAATTTTGAAGTTCATGAGTTCTGTAGTTCTGTTAGAGACAGAAGAGGTCATTGATGCGTCTAATTTCTCTTGACGAAGGACTCGTACAGGGAGGTGAGCTGGGCCTGCAGGTCCTGAGCGTAGGGATCCAGTTTCTCCTTTAGGTCTTCAGCGTAGGGTGTGAGACTCTGCTGGACCATCTGGGCTCTCTCTCTAATCTGAATCTGGAGGTCCTCAGTCAGAGGCGTCACGGTCTTCTGGAACTCCTGCAGATGTTGATCCACTTTCTCCTTGATCTCAGCAGTGTAGGGCTCCAGCTGAGCCTGCAGCTCCTTCACGCTCTGCTCCAGGTTTCCTTTCAGCTCCTCGCTCTTCTGGAGCAGAGTGGCCTTCAGGGTCTCAGAGTCCAGGTTGTCAGCATACGGAGCCATGGCCGTCCTGAGCTCCTCCACTCTCTGCTGGATCTGGCTCTTCAGGTTGTCAGCATAGGGCTCCAGTTTGTCTCTTACGCTGATCAGGTCTTGGCCCAGACGCTCCCTCAACACTTCAGCTTCCTTGGTGATTTTGGTCATTAGCTCTTCAGTCAGAGGATCCATCTGCTTCTTGATGGTGACGGCGTATTCGCTGGCCATATCAGCACCCTGGGTCAGTCTGGTACTGTAATGCGAAAAGCGTGTCCTCTGCAGTGCGTGTGGCCTGGGCAACATAGCTCCAGAAAGCATCGGTCAGCTGCTCCAGCTGTGGCTTGGGCTCATCAGCATAAAACAGGTTGGCTTGGCAGCCtggtaaaatacaaataactaGGTTTAAGCCTACTAGTCTTTTCACAAATCTGCTCAAACAGctaaatattacagtatgtCATGTTCTGTGGTttctttgtatatttacatgacAAGTTGCAATGCAGATCTTAGCATAGttctaatataattttaattgataaatacatatatattttgcttcTTGGCCATATCAGATTTACCTGTGAATGCCACGAAGGCAAGTACCAGAtacaatttcattttcaaagttgtttgctaaaaaaaagagagagagataaatattatttacattgacATATTCTAAAGCattgcatatttgtttagacgttacttttcattttgttgaagcattttagtaatttattattgcCAGCAAGCTTATATTACCTTCAGGTTCCACAGTTATTTCTTAGTCCAGTAAGCATTAGTGAGTACAGACACTGGCTATATAtatgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167086 lncRNA downstream 11466 15369440 ~ 15369965 (-) False LOC122360651
TU167063 lncRNA downstream 33216 15347173 ~ 15348215 (-) True G113147
TU167026 lncRNA downstream 73013 15307865 ~ 15308418 (-) True G113125
TU167012 lncRNA downstream 74896 15301874 ~ 15306535 (-) True rps27.2
TU166956 lncRNA downstream 184077 15185251 ~ 15197354 (-) False G113073
TU167053 lncRNA upstream 4662 15402327 ~ 15404627 (-) True G113138
TU167054 lncRNA upstream 4662 15402327 ~ 15406083 (-) False G113138
TU167055 lncRNA upstream 10283 15407948 ~ 15412843 (-) True G113139
TU167043 lncRNA upstream 11666 15409331 ~ 15411013 (-) False G113136
TU167042 lncRNA upstream 16281 15413946 ~ 15428662 (-) False G113136
XM_043261447.1 mRNA downstream 6127 15365188 ~ 15375304 (-) False LOC122360651
XM_043261446.1 mRNA downstream 6129 15365188 ~ 15375302 (-) False LOC122360651
XM_043261445.1 mRNA downstream 6129 15365188 ~ 15375302 (-) True LOC122360651
XM_043261448.1 mRNA downstream 19291 15355634 ~ 15362140 (-) True LOC122360653
XM_043261692.1 mRNA downstream 38660 15342331 ~ 15342771 (-) True LOC122360842
XM_043260915.1 mRNA upstream 33155 15430820 ~ 15476204 (-) True bcam
XM_043260916.1 mRNA upstream 33155 15430820 ~ 15476203 (-) False bcam
XM_043260093.1 mRNA upstream 95283 15492948 ~ 15496413 (-) False rps19
XM_043261113.1 mRNA upstream 108394 15506059 ~ 15627109 (-) False cadm4
XM_043261112.1 mRNA upstream 108394 15506059 ~ 15546442 (-) True cadm4
XR_006252733.1 other downstream 467785 14909325 ~ 14913646 (-) False LOC122359907
TU166030 other downstream 1079812 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1697522 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3969654 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 4094999 11270664 ~ 11286432 (-) False G111450
TU167048 other upstream 70815 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 70815 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 70815 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 95156 15492821 ~ 15496375 (-) True rps19
TU167155 other upstream 419314 15816979 ~ 15819086 (-) True G113203

Expression Profile