RNA id: XM_043261447.1


Basic Information

Item Value
RNA id XM_043261447.1
length 2913
RNA type mRNA
GC content 0.40
exon number 15
gene id LOC122360651
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15365188 ~ 15375304 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATAGAACTGTATTGCCTGCATATTTAAATGACCTGTCACACTTTAATAGAATCTCACTTGGAATTTTTTTGACCAGCTGGGTGATCAAgcagtttttttcttataacCTCTGGCTTTTTGCTATTCAGCCACTGATGTTTGAAAGCCGtgaaaatgcatttatgtgctTTTCTTCTGCTGAGCTCAGTTTTGACTCATTGTCATGCATCACCTATGAGGAATGGAAGGGCATTCCAGATATAAACAaagGTTTAAATCTCAAAGAAGGTGACATCATGATGCCAAAGCAAAAGAGTGCCATTCTTGGGAACCGGTGGGATATTTCTGTCTCCTATGAGCTAAGTGTGAATCTAAGTGTGAACTATAAAGGAGTCATTTTGAGAGCCTTTGAGCAGTTCAGACTGAAATCATGTATTGATTTTAAGCCCAGAGCACCAGAAGACATTTCTTACATCTCTGTGGAGAGTCATGATGGGTGTTGGTCATATGTCGGTCGTGCATTTTTTGGAGCTCAGCCTCTCTCGATTGGAGATGGCTGTGGGATAAAAGCTATTGTTGAGCATGAGTTTCTCCATGCACTGGGATTTTGGCATGAACAGTCAAGATATGACAGAGATGATTATGTGACCATCAACTTTGAAAACGTTATTACAGGGCAGGAGCATAATTTTGATAAATACAGTGACAACCAAACCACCACCCAAGGTACCCCATATGACTACTACTCTGTGATGCATTATGGTAAAAATGATTTCAGCAATGGTAATGGATCCACAATCATTACCAAGCAACCAGAGTTTCAAGATGTGATTGGTCAACTCCTGGACTTGAGTGAATATGATGTGATTGAACTCAACAAACTCTATAAGTGCAATTCGTCTATCTCTTTCCTTGATCACTGTAGTTTTGATGATGAATCTCTGTGTCAGATGAGCGTCTGCTCTGCTGCTGATTACGGCTGGCAGAGAGTGAAGTCAGTGAGTGGCATCAATGTGACTGACCACACATACTTGGGCAAAGAACGAAATGAGACGTCTTTCTTCATGCACTTCAGCACAGAGGGCAGAAATGAGGGAGATATAGCCAAAATGGAAAGCAACATAATGACCCCTCAAAGATACTGTAAAGTCCAGTGTCTGCAGTTCTACTACTATCACAGCGGTCACGAGTCTGACCAGCTCAATATCTGGATCAGAGAGTACCAGAACGAATCAGACAGCAGAGGAACTCTCAGACTTATGGATCAGATCACAGAACCCCCTGGTAATTACTGGAAGCTGCATCATGTGCCactgaatgcaaataaaaccTTTCAAGTTGTATTTGAAGCCCGTAAAGGAGATGGAAACTCCAGTGGAGGATTTTCACTGGATGATATCAATATTTCAGAGACTGAGTGTCTGCACACATGGCAGATCAGAGACTTTGAGAAGGTTTTGAAAAACAGTGTGTCTGGCTTTTGGATGTACAGCCCGTTGTATTACTCCAGTGATGGTTATCGCTTTCAGGCTGGCTTGAGACTGAATCAGAATTACCTTTCAATATATGTTCGTCTGGTTTCTGGTGTATTTGATGATCAGCTGCAGTGGCCTTGTCCATGGAGACAAATAACCTTCCAGATGCTTGACCAGAATCCAAACATACAGAAGCGCATGTCCTCTGAGAAAAGCTTCACAACTGAtccttatttaatttatttaaATGTCAGTGTTTGGGACAATCCTCAAAAAACTGGAACTCAAATCTTTAATGGCAATGAGACTGTACATGTGGGTCTTTTGTGGGGCTATCAATATGCCATAATGAAAGAGGACCTCACTAAAAGAGAGTTTATCAAGGGTGGTGACATCATATTTCTCTTCACCTTGCAAGATATTTCTGAGTTGCTTCAGAAGGACTCTCTACCCTGTCCTAAAGCAACAGTGAAGAACTTCAACGTTACTCCTGATGTGAGTGCCCAGCAAGGATCATGTGCTCCAagAGTTCGTCCAACAACTATAACAGCAACAACCACTACTGCTGCTAAAAGAATTACAACTACACCAAGATTTACTGAGAGTTCCAGTGCCAAGACTGCTTCCTCTTTGATCACCATGATGGTTTGCTTTCTTTTGCTGGCGAGTTAATCATGAAAGtactataattattatcagCCTTATCTCTGACTTCACGAGTTCAGCGCCAAAGAGCGGAATCTTCAGCTTTTTGCTACATGCATATGATAATTAAATACgcattgatcattttaatgaatgttgaAGCCAACATTAATCATGATGATTTACACACTGTCccctttaaaaaataagtaaaacatttacttttatttagtcttcttttttctatcttttttcaaTCAAGGGGGTTTTACTGTAAAGGGGTAAATCTATAAGGGGAAGCCTATGCACTCTACATGCAAGATTTTGGTGGCATCTAGTGGCACATGATGAAGCTTCCATTGTGAGCTAAAGGACATGTACAATTATTTTAGATGAGTGAGGAAAGTCTTCTGTTAAACAACCTAATAAACAATGAGAAGCTCAAAAGCTAACACCGTCTGTCTTAAGTTTTCTGTCAAGATGTGAATGGTTAAACAATTGCGACAATTCACTCTTTCAACTTTACACTTCTTGCTGACACTAAATATTGTGCTAATGGATACACAATTTGCAATAAGAATGCATGGTTTTTACTGCCTCTCATGAACATATGAACACATGAACACATCAGTTGATGACTGATGACTTTTTACCATTGAGATTAATGTCTACACACTGTATATTTCAACTCGAGTTACCATATTGTTAGTTGTGGTGTATGGACTCTTCTATTTTCTTAAAGtgtgatgtgtgtatgtgactttagacagcattttaaacatCTGTCAATAAATACAACCATGGAATTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167063 lncRNA downstream 16973 15347173 ~ 15348215 (-) True G113147
TU167026 lncRNA downstream 56770 15307865 ~ 15308418 (-) True G113125
TU167012 lncRNA downstream 58653 15301874 ~ 15306535 (-) True rps27.2
TU166956 lncRNA downstream 167834 15185251 ~ 15197354 (-) False G113073
TU166957 lncRNA downstream 178753 15185138 ~ 15186435 (-) True G113073
TU167066 lncRNA upstream 6127 15381431 ~ 15397665 (-) True G113149
TU167073 lncRNA upstream 6127 15381431 ~ 15392147 (-) False G113149
TU167075 lncRNA upstream 6127 15381431 ~ 15385780 (-) False G113149
TU167076 lncRNA upstream 6127 15381431 ~ 15385780 (-) False G113149
TU167053 lncRNA upstream 27023 15402327 ~ 15404627 (-) True G113138
XM_043261448.1 mRNA downstream 3048 15355634 ~ 15362140 (-) True LOC122360653
XM_043261692.1 mRNA downstream 22417 15342331 ~ 15342771 (-) True LOC122360842
XM_043261602.1 mRNA downstream 24963 15332658 ~ 15340225 (-) True osgin2
XM_043260481.1 mRNA downstream 58577 15302174 ~ 15306611 (-) False rps27.2
XM_043260023.1 mRNA downstream 201563 15154318 ~ 15163625 (-) False trim46a
XM_043260915.1 mRNA upstream 55516 15430820 ~ 15476204 (-) True bcam
XM_043260916.1 mRNA upstream 55516 15430820 ~ 15476203 (-) False bcam
XM_043260093.1 mRNA upstream 117644 15492948 ~ 15496413 (-) False rps19
XM_043261113.1 mRNA upstream 130755 15506059 ~ 15627109 (-) False cadm4
XM_043261112.1 mRNA upstream 130755 15506059 ~ 15546442 (-) True cadm4
XR_006252733.1 other downstream 451542 14909325 ~ 14913646 (-) False LOC122359907
TU166030 other downstream 1063569 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1681279 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3953411 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 4078756 11270664 ~ 11286432 (-) False G111450
TU167048 other upstream 93176 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 93176 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 93176 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 117517 15492821 ~ 15496375 (-) True rps19
TU167155 other upstream 441675 15816979 ~ 15819086 (-) True G113203

Expression Profile