RNA id: TU167091


Basic Information

Item Value
RNA id TU167091
length 718
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G113151
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15418906 ~ 15420427 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttGATTTTCTACAAATGTGGAGTTTTATTGCTATTTGTTAATGCTCATGGACAAAGAACCACTAAATGTTGATATAAtacaaggattttttttcatctgtacAGATAAACCACAATGAAACGGTCGATGATTCTTTTTTAACCTGGATGTACGATAGAGGGCGCCAGGTAACAGTCAGCAGCAAAGAGTCTCTGATCTTCATCCAAAAACAGATTGTGGTTGAGCATTATACCCGATTTTACCACAGAACTTCACATCATAATTATCCACTGATGTGTGTCAGGGTGCTCGTGcttttgcagtatttttgaCAGGGCGAAGGTAACAGGCCTTTGGAGTTCAACAGTCATATTTTCAGCTCAGTGCCATCTTTTTCTGAGATGCATGTGATTGTAGTTCCAGCGTGATGATGGACTCAGGACCAGAAAGAGATGGAGTTTTGTTGATGTGTGATACAATGTGATTTAAGAGCTGTCTTGAGGGTACAAAATGTGGTATAGCTGGTCGTTGAAGATGCCGGCGTAGGTGCTGACAGCACGAACTGTGTCCTCGTACAGGTTCTGGCTTTCTCATCCAGCTTGTAGCCCTTGATGGTTTCAACGTAGCCGCTGGCAGTGTCAACGCTCTGGTCGTAGTAGGACCTAAGTGTGTCCACTACAGTGGCAACGGTTCCCTTCTCATCTTCAGCTTGCCTGGGCACACGGAAGCTCTCCGCTC

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167044 lncRNA downstream 3187 15325559 ~ 15415719 (-) True G113136
TU167055 lncRNA downstream 6063 15407948 ~ 15412843 (-) True G113139
TU167046 lncRNA downstream 7893 15325559 ~ 15411013 (-) False G113136
TU167043 lncRNA downstream 7893 15409331 ~ 15411013 (-) False G113136
TU167054 lncRNA downstream 12823 15402327 ~ 15406083 (-) False G113138
TU167104 lncRNA upstream 244809 15665236 ~ 15672119 (-) False fxyd6l
TU167105 lncRNA upstream 244809 15665236 ~ 15672119 (-) False fxyd6l
TU167106 lncRNA upstream 244809 15665236 ~ 15672119 (-) False fxyd6l
TU167107 lncRNA upstream 244809 15665236 ~ 15671011 (-) False fxyd6l
TU167108 lncRNA upstream 244809 15665236 ~ 15672119 (-) False fxyd6l
XM_043261447.1 mRNA downstream 43602 15365188 ~ 15375304 (-) False LOC122360651
XM_043261446.1 mRNA downstream 43604 15365188 ~ 15375302 (-) False LOC122360651
XM_043261445.1 mRNA downstream 43604 15365188 ~ 15375302 (-) True LOC122360651
XM_043261448.1 mRNA downstream 56766 15355634 ~ 15362140 (-) True LOC122360653
XM_043261692.1 mRNA downstream 76135 15342331 ~ 15342771 (-) True LOC122360842
XM_043260915.1 mRNA upstream 10393 15430820 ~ 15476204 (-) True bcam
XM_043260916.1 mRNA upstream 10393 15430820 ~ 15476203 (-) False bcam
XM_043260093.1 mRNA upstream 72521 15492948 ~ 15496413 (-) False rps19
XM_043261113.1 mRNA upstream 85632 15506059 ~ 15627109 (-) False cadm4
XM_043261112.1 mRNA upstream 85632 15506059 ~ 15546442 (-) True cadm4
XR_006252733.1 other downstream 505260 14909325 ~ 14913646 (-) False LOC122359907
TU166030 other downstream 1117287 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1734997 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 4007129 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 4132474 11270664 ~ 11286432 (-) False G111450
TU167048 other upstream 48053 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 48053 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 48053 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 72394 15492821 ~ 15496375 (-) True rps19
TU167155 other upstream 396552 15816979 ~ 15819086 (-) True G113203

Expression Profile