RNA id: TU167104


Basic Information

Item Value
RNA id TU167104
length 1279
lncRNA type sense_over
GC content 0.40
exon number 9
gene id fxyd6l
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15659752 ~ 15672151 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGGGAGGAGTCTAGCCCCGCTACACAGGCGCGCGTTCGAACAtcactaaatatttacatgtacgtGTCATGTCCACAACTATGACTGCGTGCAGCTCACGGTGCAGGGAATAACACTTTTTATACTCGTATAAGAAGACTTTTCAATCATCATTTCACTAGCAATTCTATAGAAATTTTGTATAACATACTGGGTCGTCGAGAGATTGCTTCTGGTTTGCCCCAGGGTTTCATTAAAACCGGATTCTTTGGTGTTGAGCAGCATCGAGCTGGGATTGAAGACAGCCCAGTGTCTCACACTCGCTTGTGTTTTCAGACAAGATGGAACTTTACGTTGCTGCAGTGCTTTTGTCCTACTTCGCTCCAGCTTTGGCTTCTCAAACGGACGAAATTCATGAATACGACAAGCCATTTCATTATGATTATGAATCTCTGAGGATTGGTGGCATGGTCTTTGCTGTGATCCTCTTCCTGATGGGGATCTTCCTTATTGTCAGTCGGAAATGCCGCTGCAAAGGGAACAAGTCAAAGCCAGTGGGTATTGACGCAGAAGCAGCCAGAGGGGCAAAATAAAGTGAGCTGAGGGAACAGAGAAAAAGAAAGCATGGCTTCTTAAGGAGAAATCTTAATCAGAACTTCAACCGTTTGGAAGAAGAAAGTCACCTGAGGATTTAGTTCTTCTAgtattcacagttttttttaaacaattttgtcTTTGTCTCTTGGGTACATGAGAGTATGAGTGctcctttttaaaatttgaagttttaaaaaaatattgtttaaacaaGTGTCGATTATCAGCTAGAACTACTGCCATAATATTTAACTCCGCAGCTGATACCTTTTGAGATTTTCCTCCACTTTTTGTCATGTACTTTTCAAGCTCTCTGTGAAGTTTAGGAAATGCGTAGCGTAGCATGTGCAAGTGCTCGGTAGCTAGTGGTAGTAAGtggaaattttatatattttgtaaattgtcCATACAGTTTTGTCATGTCCCGGAAGTAACAAATCAAACGCTGTAGTTGAAAAATAAAGCGATTTCCATGGAATGTCTATTAAGTGTCCTCAAGAAAATGTAACCGTTATATAATGTGTGCTTGGCATCTGCCCTGGTCTGTCTCTCATATTCGTCTGTGTTATAAATAGTTGACCCTGTTATTAGTAGTAGGCCTAATAGTACAAGCAGTTTGATATTGCAGTTGCGTCACTAATGTTGCAGTAGTATCtagcttctgaaaaaaaaaagtaataaaaaactcatataaaatatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167042 lncRNA downstream 236574 15413946 ~ 15428662 (-) False G113136
TU167091 lncRNA downstream 244809 15418906 ~ 15420427 (-) True G113151
TU167092 lncRNA downstream 244809 15418906 ~ 15420427 (-) False G113151
TU167044 lncRNA downstream 249517 15325559 ~ 15415719 (-) True G113136
TU167055 lncRNA downstream 252393 15407948 ~ 15412843 (-) True G113139
TU167130 lncRNA upstream 33704 15705823 ~ 15706059 (-) True G113179
TU167117 lncRNA upstream 37619 15709738 ~ 15717886 (-) True G113168
TU167138 lncRNA upstream 91350 15763469 ~ 15763745 (-) True G113187
TU167205 lncRNA upstream 234114 15906233 ~ 15906830 (-) True G113232
TU167204 lncRNA upstream 234980 15907099 ~ 15908673 (-) True G113231
XM_043261882.1 mRNA downstream 18945 15641174 ~ 15646291 (-) True si:ch211-79k12.2
XM_043261883.1 mRNA downstream 19200 15641174 ~ 15646036 (-) False si:ch211-79k12.2
XM_043260918.1 mRNA downstream 25348 15630541 ~ 15639888 (-) True si:ch211-79k12.1
XM_043261113.1 mRNA downstream 38127 15506059 ~ 15627109 (-) False cadm4
XM_043261112.1 mRNA downstream 118794 15506059 ~ 15546442 (-) True cadm4
XM_043261580.1 mRNA upstream 16378 15688497 ~ 15693259 (-) True LOC122360742
XM_043261582.1 mRNA upstream 21645 15693764 ~ 15696605 (-) True LOC122360744
XM_043261581.1 mRNA upstream 27614 15699733 ~ 15704180 (-) True LOC122360743
XM_043261694.1 mRNA upstream 47044 15719163 ~ 15721123 (-) True negaly6
XM_043262060.1 mRNA upstream 49993 15722112 ~ 15724329 (-) True LOC122361102
TU167048 other downstream 168861 15468480 ~ 15496375 (-) False rps19
TU167050 other downstream 168861 15468480 ~ 15496375 (-) False rps19
TU167049 other downstream 168861 15492821 ~ 15496375 (-) True rps19
TU167051 other downstream 169514 15468480 ~ 15495722 (-) False rps19
XR_006252733.1 other downstream 751590 14909325 ~ 14913646 (-) False LOC122359907
TU167155 other upstream 144860 15816979 ~ 15819086 (-) True G113203
TU167180 other upstream 185480 15857599 ~ 15861893 (-) True G113220
TU167269 other upstream 340845 16012964 ~ 16013751 (-) True G113275
TU167253 other upstream 467200 16139319 ~ 16141235 (-) True G113267
XR_006252800.1 other upstream 546542 16218661 ~ 16228466 (-) False atxn1b

Expression Profile