RNA id: TCONS_00011050


Basic Information

Item Value
RNA id TCONS_00011050
length 1092
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id XLOC_005037
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 250081 ~ 279335 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttctgcagagctcggttgtaacgagtgcttatttgagttaccattgctatcagctggaaccagtctggccattctcctccagtcttgttgatatgattatacacgctACTACTGGTACATGTTAGCTTCTACATACGGTCGGTCTCAAAATGGAAGGAATTTGAATCCGATTTATACCATCAGGAAACTTATAAAAAGACTTAGTGTGattatatcagcccaatatggCTGTGGACAGACCACACTGcacacagctctgtccaaacagctcacaGAAGATGGTTTTCATCATAGCTGCCCTGTAAATAAGCTTAGACGGCTTGATTTGTGCAGCTGTTTATACCTCCACCTTCCGTAATCCAGCCCTCGCCCAGCCAATCACAAGAGGCAGCTGATTACAGTGGGCGGAGCTCTGACCTGCTGCGGAAGGTGATCAGTGGAGGGACAAACTCACACCGGACCTGAGGGAAACACCACAACAAACACAGACTACAGCAGTGatgctcaaccctgctcctggagatcgaccttcctgcaaccctgattagacacacctgaaccaatgaaTGATGACCTGAACAGCGCTTGATACtgacaggcaggtgtgtttgatgtgggctgcaactgaaatctgcaggaagggacagggttggtcacgcctgGAGTACAGCCATGCTGCTCGCCACACTATCTGCTGTGATGTTTGCTGAACTCTCACACGATGATTCTGCCATCAGAAACACCCTGAAAGCGAGGCTGAGGACGGTCTGACCTGATGAAgatgataaatattaataatgaatacaCCGCTGCTCTGTGAAGACGCTGCCTCAGCGATTGCTGAAGAGATGTGAACACTCCACTGAGGAAATGCAGCTTTCCATCACAGCATTAGATGACGCTTCGCTTTCAGTATATTTATGTCACAATATCATTACGCTTCTGATCAAATAAGCTCCGCAGAGGAGGCTGAGGTGTTCAGAAGTCCTGCTGTGTGTCTCTGATCTTGAACTGCTGGATGTTTTGAGCATTATGGAGCGGCTGATGCTGTTCTCTAGTGTTTGCACTGGAGCAGAAGCTGGGTTCACAGC

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0009799 specification of symmetry biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0060897 neural plate regionalization biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0035295 tube development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011049 lncRNA downstream 69272 180200 ~ 180809 (-) True XLOC_005035
TCONS_00011048 lncRNA downstream 74562 171286 ~ 175519 (-) True XLOC_005034
TCONS_00010787 lncRNA downstream 184321 64267 ~ 65760 (-) True XLOC_005031
TCONS_00010786 lncRNA downstream 204497 43830 ~ 45584 (-) True XLOC_005029
TCONS_00010785 lncRNA downstream 207842 40988 ~ 42239 (-) True XLOC_005028
TCONS_00011052 lncRNA upstream 58473 337808 ~ 355531 (-) False XLOC_005042
TCONS_00011053 lncRNA upstream 58473 337808 ~ 355555 (-) True XLOC_005042
TCONS_00011054 lncRNA upstream 126852 406187 ~ 408631 (-) True XLOC_005043
TCONS_00009826 lncRNA upstream 181794 461129 ~ 463989 (-) True XLOC_005045
TCONS_00009849 lncRNA upstream 716495 995830 ~ 999736 (-) True XLOC_005055
TCONS_00009818 mRNA downstream 37238 204095 ~ 212843 (-) True XLOC_005036
TCONS_00009817 mRNA downstream 105005 137149 ~ 145076 (-) True XLOC_005033
TCONS_00009816 mRNA downstream 125817 118704 ~ 124264 (-) True XLOC_005032
TCONS_00009815 mRNA downstream 195706 52468 ~ 54375 (-) True XLOC_005030
TCONS_00009814 mRNA downstream 203096 42592 ~ 46985 (-) False XLOC_005029
TCONS_00009819 mRNA upstream 1831 281166 ~ 287633 (-) True XLOC_005039
TCONS_00009820 mRNA upstream 8773 288108 ~ 290815 (-) False XLOC_005040
TCONS_00009821 mRNA upstream 9430 288765 ~ 290413 (-) False XLOC_005040
TCONS_00009822 mRNA upstream 10451 289786 ~ 290782 (-) True XLOC_005040
TCONS_00009823 mRNA upstream 33113 312448 ~ 314899 (-) True XLOC_005041
TCONS_00009831 other upstream 340334 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009859 other upstream 1211137 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009912 other upstream 4007031 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 4016214 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 4018522 4297857 ~ 4301375 (-) False XLOC_005113

Expression Profile

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