RNA id: TU167117


Basic Information

Item Value
RNA id TU167117
length 4750
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G113168
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15709738 ~ 15717886 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgtgttaaattatttttttaatccacttacatgaaattacatattttcCCTCCAAATAACATTTATGCTTGGGTGTTCTGTATGAAAATTCCAGAGACATGACACAAAGCTAGCCAGCCCGACAATACTCCCTTTCCTCCCCATATTAACTACTTCATAGCCACATGCAAATTAGGCAAGtatcaaaagaaatgaatggaaaaaaggagaaaaattaaaaaaaaaacatttactggaGAGCTAAATCACACTAGTTTTTCCTACTGCTCTGCTTGTACAGTCATACAGTAACAGTATCAAGCAATATGTGCTCTTTGTTCTTAGGGTCCTCTATACCTCGTAATTAACAGGGAATAAGTAAATGCCTTTTGCTGGGCACCAAATGCCTGGAATAAGAAActtaaaagtgacaataaatgGAATGTAACTTCTTTTTCGCCCATCATTTTGCAGGACGCGCGAGAGCGAGCAGTTCACTGTATGACGCCGCTGTTGCTCTTTTCCTAGCTAAAGACTAGCACTGCTATCCTCACCTCTACTCGAAGACAAGGGCTGTTTATAATGCAGACGCTTAAATTGCAGGTGTACATAATGACCATGACAAATGACTCCTTGAAAGAgatttacatacagtatacgAATAACAAAAGGGTTTAAACTTGCAACTTTGCATGAGCTGAGAACTTGCCTCACCCGCATACCTTCCGCGCTAATGCGACAACCTAGAGCTCCCCACGGAGAAAACAAGGTTAACAGCAGACAAACCTCATCCCCTCCCGGTCCCCCGCCTCCGGGCCGCATCCCGACGCCCACCCACCCCTATTTAACCCCTCCCACCCACCTCCCGTTACACAAATCCttagaaaaaaacccccacaatgACAGGGAAGGAAGAAAGCAAGGAAGGCGCGAGAGTAAAAGAACTAAAAGAGACAGAAGTCGACGATGAGGTGGTCTCAGTGTTGATGGTGAGCTGGAACGATGGCAGGTGAATAACAGGGGAAGGACGGACAGAGCGAGACTCAGTTTTCCCGGCCCTCCTCGGTGTCCTCGCCGTCGCCCTGGTTATCTGAAGTCCACAGCTGCGAAACGGAGGAAAGGACACTAGTCACTCATCAGTTCGAACACCTTAACATCTGCTCCTAGTTAGCTTTCTTTTAAGCTCGGATAAGTATAAACATCACCTAAATAAAGGTGTTTATATCCTAtagttacattatatataagCTATACCAATATTGTTGGAATCAGAACAATTTATTGCAGGtgattaataatgaaacaatgaCGATCAATAAAAATTCACTCtgactttaaaagaaaaagaaagaagaaagaaagaagatttaaaaacagcagATTATAACTCCAGCAAATGTTCCCAATAAACAATGTTATCGTCAGCTGGTGTGAACACTAATAGCTAGGCGTCCTCTGTGTGAACGGGCCTTAAATCTTTAGTTACTAAATATTAACTAGACTAAATTAACATGGTAAACGGTCTTAATTTAACCTGCTGTTAAACAGACACTCACTGTCAAATTGTCCCGCAGTAGCTGCATGATCAATGTGCTGTCTTTGTATGACTCTTCATTCAGTGAATCAAGCTCTGCAATGGCCTCATCAAAAGCCTAGGAGAAACAGATCAACCAACCGACATTTAGATGAAATAATTGTTCTCTTCTATGTTGTTTATTAGCCTGTGtgcgtgtgggtgtgtgttaACCTTACCGTTTTGGCAAGCTTACAGGCCTGGTCGGGCGCGTTGAGAATCTCGTAATAAAATACGGAGAAATTGAGAGCAAGGCCCAGACGAATGGGGTGTGTGGGCTGCATCTCTGCCTTGCTGATTTCAAAGGCATCCTTGTAGGCCTCCTGTGAACTGCCAATGATAGCTGGAGATACAAAGAGAAAATTGTGTGAATGTAATTGAATATTTATAAGATTTGATGATATAGGCTTATATAGGACAACATAATaggcttaaaaataaataaaacatttcgtAACCGTTTATATAATGACTACCATTTCAACAAAACTGAACTATGACTTGaaatttcaatttaaacttTGCACGCTCACATTGTGCACAGAATATTTAAACTTGAGTACAGTTTGTTTTATATTGGTTTATTCAATTTTGAATCaattcaaaaagtaaaatgaaatgaggcttaagcaacaaaaaaaaaagtcttttcagCTGATATGAACAAACACTTCTTGCTGTGaacaaattcaattatttttttccactagGTGGCGTTAAAGCACAAACTTTCCGGTTGGGAcagttttagtaaaaaaaaaaaaaaaaaaaaattctaaagctTAGCACTAAgcacttttaatattacatttaataaataaatataaagaggAGAAATTGAGTTATTCTGATCAACCACCTAaagatttttactttacaaaactattttacctatttaaatcatctcaaattattattattttttttactagcgCTTCCAtcctacactctcagaaataaaaggtacaaaatctGTCACTAGGGCGGTACCTCtttaaaaggtacacttttTGTACCTATCAGGATTAAACAATTGAACCTGTATTTCTGAGAATGTACTGCAATCACCAACTGTAAAATTGATTTCAggttataaatacatttttttaatccatcCAGGCAAGTTTACAGAGGCACTCTGCTTTCGCTATGTGTAACCCATGACTTAGACACGAAGACCCACAcctgtttctattttgattgTACTCTGCTTCTAGCATCTCTTAATAAACCGCAAGATCTTCAGATATAAGACTTTACATCACGTAGGGCCTTTCAGTCAACACCATTTCTACCAAGAGTACAGAGAGTACTAAATATCTGATGGCGTTGAGTGAGAAACGAccacatcaacaacaaaaaaagattatattcCATTTCCTTCTTAACAAGACGGAACAGGAATCCGACAAgctgtgaagcggctctggagCTCCGCCCACGCACAGGCTCTCATTCATTCAGTGAGGTGGACGCACATGTCTGCACCTGTTCCAATGAAGGAAGGAAATCAGACCGCTAACCATTTCCCCTGTAGGCCTAAAGACCctccttttattatttcttctccctctctttcccaTAACCGAATCCTAAAGCCACACCCAGAGAGCCTGTCAACCTCCTGGCACAGGAAGACTGCCGCATGATTCTTCCTGTTATGCACACCGCAGTCCTACCAAGACAGACAATGGAGAGCAAACCATTTCAAGGTTTATATAGTATCTGCTTTAAATAGAACCCGCCTGTGAACAGAGAGTCTGGTAATCACCTAAAACTACAACTGAAACCTTTAGGGTCAGTagatatatacatttgtttgtttgtttatttttaagtcctgtgctcatcaaggatgcatttatttgatcaaaaatacgtaattgttttattgtgaaaaattgCTACgatttaaaaaactaatatcTTCTATTTAAtaccatttaaatgtcatttaatgcTGTGGCAAAgccgaattttcagcatcgttactccattATTCAGTCTGGCATGATGCttaaaatcattcttatatgctgatttttgCGTATTATGGAACCATGACAATCTCTTCTGGATTTTTAGAAGAACAAAATTGtattaaagaatagcatttattttacagaaacattttcctgccacttttgatcaaataaatgctgaaatgaaagcattcattacttcataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagatgaatggaGTTTATGAATgggtcaaaaaaacaacaaaaaaaaacaaaacacccaGACCCTCTTACTTCCTCTCAAGCTTGGCTTCGTGTCAACATTTTGCGGAAGCGTTACATTTTTAGCAGAAGTTAGAGCGTTCAGAGGCAGATGGTGGAGACTAGTCACTACCGCAGCTTTGAGAGCCGCGCTGCATTGTTCAAATGCCTACATGATTAACTAGCTAACACAATCTGACATTGTTAACCGGATTTAACGATATAAGGAGCTCCAGGGGGTGCTAGACATCCATCTCCATCTttctaatacatttaaatatacaaaattcaCTTCTATCATTTAATTGAACAAAGAATATCTTTTGTTTACAGTCATGTCAATgaaatccaaaacaaacaatTCTGCACCAAGTAACTTTCAATTTAAGGCCCAAAAAtgggagaaaaataaaaagtcctATTGGTTTGAATTGAACAATCTGAGTGAGTTATTGGATGAAGTTTTCCTTTAAATTTTAAGGATAGACTTAAGAGAATGGCTTACAGCTTTTCTCCTCTCCCACAGCCACCTCCGCTAAGTAGCGAAAGTAATCGCCTTTCATTTTCAGATAGAAGACTTTACTTTCAGCAGGGGTCGCTTTTGGGATGAGGTACTTGTCCAGAAGAACCTTACGTCATTGCAGATCTCCTTCAACTCCTTCTCGATCTTTTCCCGATATTCCTTGACCATTTGCTGCTTCTTATCGCTGCCCTCCGTCTTCTGCTCGATGCTGGAGACCACTCTCCAGGAGGAGCGGCGGGCACCCACCACGTTCTTGTAAGCCACCGAGAGCAGGTTGCGTTCCTCGTTAGACAGTTCAATGTCACCCTCAGTGACGGACTTCATAGCGGCTGCCATGTCATCATAGCGCTCTGCCTGCTCGGCCAGCTTGGCTTTTTGCACTAGCTCGCTCTTGTCCATGGCTGCTCAGTGctagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167130 lncRNA downstream 3679 15705823 ~ 15706059 (-) True G113179
TU167108 lncRNA downstream 37619 15665236 ~ 15672119 (-) False fxyd6l
TU167138 lncRNA upstream 45583 15763469 ~ 15763745 (-) True G113187
TU167205 lncRNA upstream 188347 15906233 ~ 15906830 (-) True G113232
TU167204 lncRNA upstream 189213 15907099 ~ 15908673 (-) True G113231
TU167216 lncRNA upstream 193426 15911312 ~ 15946683 (-) True G113236
TU167209 lncRNA upstream 211336 15929222 ~ 15958664 (-) False G113234
XM_043261581.1 mRNA downstream 5558 15699733 ~ 15704180 (-) True LOC122360743
XM_043261582.1 mRNA downstream 13133 15693764 ~ 15696605 (-) True LOC122360744
XM_043261580.1 mRNA downstream 16479 15688497 ~ 15693259 (-) True LOC122360742
XM_043261031.1 mRNA downstream 38749 15665236 ~ 15670989 (-) False fxyd6l
XM_043261694.1 mRNA upstream 1277 15719163 ~ 15721123 (-) True negaly6
XM_043262060.1 mRNA upstream 4226 15722112 ~ 15724329 (-) True LOC122361102
XM_043260583.1 mRNA upstream 17387 15735273 ~ 15753910 (-) False kcnn4
XM_043260582.1 mRNA upstream 17387 15735273 ~ 15753910 (-) True kcnn4
XM_043260584.1 mRNA upstream 36295 15754181 ~ 15759667 (-) True si:dkey-79d12.5
TU167048 other downstream 213363 15468480 ~ 15496375 (-) False rps19
TU167050 other downstream 213363 15468480 ~ 15496375 (-) False rps19
TU167049 other downstream 213363 15492821 ~ 15496375 (-) True rps19
TU167051 other downstream 214016 15468480 ~ 15495722 (-) False rps19
XR_006252733.1 other downstream 796092 14909325 ~ 14913646 (-) False LOC122359907
TU167155 other upstream 99093 15816979 ~ 15819086 (-) True G113203
TU167180 other upstream 139713 15857599 ~ 15861893 (-) True G113220
TU167269 other upstream 295078 16012964 ~ 16013751 (-) True G113275
TU167253 other upstream 421433 16139319 ~ 16141235 (-) True G113267
XR_006252800.1 other upstream 500775 16218661 ~ 16228466 (-) False atxn1b

Expression Profile