RNA id: TU167216


Basic Information

Item Value
RNA id TU167216
length 2062
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G113236
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15911312 ~ 15946683 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTCTTCTCCTCCGAACACATATATCCTCTGGTTATGCGCAGCTACAGCTGGGTGCAGCACTGCGGTGGGCATCGGGGCCATGGTCTCCCATTGATTGAACATGGTGTCGTATCGCTCTACCTCATTGGACAGCTGTCCATCGGCCGTCAATCCACCCagtatgaaaatgaaatgcaggTAGGTGGAGCTCTGATGGGCGTACCGAGGCGTCAGCATGGGTTCTCCCATTCTCCACTGGTTTGTTTTGAGAGAAAGCGTGTAAACGGTGTTGCTAGGTGTGCACTGGGCTCCTGCTTTCATGGTTAAGCCACCCAGAACGTAAAGGATGCTGTGCATGCAAACATAAGCGGGTCGGTAGAGCCGCAAAGGGACTTTTGCAAGCCACTGCCAGCAGTGAGTTTGCTCATCGTAGAGTAGCGCCTCACGAGATGTCCGCTCGCCATTCTTACGACCTCCTACTACTACAAGAGCTTCCTTGCAGTTTTGACGCCGAGGCGCGGCCCACATGGGCTCGAGATCGCCAGAGCAATGAGTGCCGACAGAAAAGAGAAGTCGACGAACAGATTCGATCATTTCTGTGCATAAAGTTGAAGACTGGACTAGAGGGTCGTTGGCGATAAACTGGAAAAGATACGAAGGGTGGACATGTCTTAGTCTCACACGACGGAATAAGTCATGGATGGTGCCGCGTCTGGAGAACGGGTCGTGGTGGATCCAAGCTAGAAGGGTCTCAAATACTTGCTCCTCTTCAACGCAAAGCCTGTCGTCTTCCAAGTAGCTCACCAATTCGGGTAGCGAGAGTTCGCAGAAGTCCTCGGAGACAACCACATCTGAGAAGCTCTTCACGGCCAGCTCTCTTGCTTTTTCCCTCAAGCTTGAGCAGTGCAGGATGTCCGAGAGCCGGATCATGCTCAGGCAGTTGTCTGGACTGAGCTGGGCCTGCAGGAAGGTGGAGCAGGCCTCGAAAAGTCTTCCGTACTGAAGCATTGAGGCGGCTTGCATCAGAGGGAGAACCAGCTCCATGGTGATGCTGATGGACCCCGTGTAAACATACTCCACCACACTCCTGAGGATGTCATAAGGAACACCTTGGAGGTTTATCTGGGGCTTCTGGGTCTCCAGGAAGCTGCTGCAGAACATAGCGTAGAAGTAAGGGCTGCTGGACACCAGAACGTTGCGGTGACATGGGATCTCTTTGCCCTCAGAGCAAAGCTCAACATCTGTGAGAATTCGGTCCTTCCTTAAGGTATTCAGCTCCAGAAGGAGAGTGGAAGTCAggattttgtcattaaaatgcaaGACTTCTGATATTGGCTCATCTAAGCTGTAAAAAAGGAGGTTTTACGATCAtaacattttctgtaatttaaatatttgttgccACAATTGCAGAAGACAGCCTATTTTTCCTaattgtacacaaaaacaataattgcaGCAGTTTAGATGCATTCCATAgaactatttaatttaaaatctaaatgaagCAACATTATATTTACAGCTTTTATCTAACATTCAGGGTCATCaaagtgtatttataaaatgaatgctatgaataaataataaactgacTGACACAATGACATGCTTAAACGTGATTGTGAAGTTGCATctgtgaatattttcaaaagcatCACATTTGCACGGTTTAATTGgcaatttcactttttaagacaaaaaataaaaagataacagAAATTGGTCCCTCGTCATCATATTTTATAGCCAGAAAACATATACTTTTAACAGTTCTGCATGTTCACTACACAATCATAGAGATTTGAGTTGTCCAGTTTACCCGAAGACTGATATATCATAGCAAACACACGCCATGCCGTTATCTACAAAACCCACAGGTGATGTTGTGCCTGCAGTCATATCCTGCCTTACCTCGTCTCAGCCGATTTGAAGCACATTCTAAAAGGTCCTGCAAAAAGATCTATTTATCATCAAACCTCAAACAACACGTCCCTCTGTTTTCAAAATCAGCGCACTTCTGAAAGTTGCTCACTCTCAAGAGTTTGGCAGGTGGATGTTTttttttttttttttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167204 lncRNA downstream 2639 15907099 ~ 15908673 (-) True G113231
TU167205 lncRNA downstream 4482 15906233 ~ 15906830 (-) True G113232
TU167138 lncRNA downstream 147567 15763469 ~ 15763745 (-) True G113187
TU167117 lncRNA downstream 193426 15709738 ~ 15717886 (-) True G113168
TU167130 lncRNA downstream 205253 15705823 ~ 15706059 (-) True G113179
TU167208 lncRNA upstream 4745 15951428 ~ 15958664 (-) True G113234
TU167211 lncRNA upstream 4745 15951428 ~ 15958664 (-) False G113234
TU167207 lncRNA upstream 8812 15955495 ~ 15958664 (-) False G113234
TU167227 lncRNA upstream 18075 15964758 ~ 15967193 (-) True G113244
XR_006252813.1 lncRNA upstream 38058 15984741 ~ 15986184 (-) True LOC122360541
XM_043260373.1 mRNA downstream 42101 15867304 ~ 15869211 (-) True prss1
XM_043260368.1 mRNA downstream 106610 15799086 ~ 15804702 (-) True has1
XM_043260584.1 mRNA downstream 151645 15754181 ~ 15759667 (-) True si:dkey-79d12.5
XM_043260583.1 mRNA downstream 157402 15735273 ~ 15753910 (-) False kcnn4
XM_043260914.1 mRNA upstream 12986 15959669 ~ 15963708 (-) False prelid3a
XM_043260913.1 mRNA upstream 12986 15959669 ~ 15963708 (-) True prelid3a
XM_043261263.1 mRNA upstream 51629 15998312 ~ 16000648 (-) True rbfa
XM_043260048.1 mRNA upstream 54630 16001313 ~ 16006471 (-) True adnp2a
XM_043261540.1 mRNA upstream 123856 16070539 ~ 16103655 (-) True LOC122360718
TU167180 other downstream 49419 15857599 ~ 15861893 (-) True G113220
TU167155 other downstream 92226 15816979 ~ 15819086 (-) True G113203
TU167050 other downstream 414937 15468480 ~ 15496375 (-) False rps19
TU167269 other upstream 66281 16012964 ~ 16013751 (-) True G113275
TU167253 other upstream 192636 16139319 ~ 16141235 (-) True G113267
XR_006252800.1 other upstream 271978 16218661 ~ 16228466 (-) False atxn1b
XR_006252795.1 other upstream 286289 16232972 ~ 16239506 (-) False fam8a1b
TU167506 other upstream 733514 16680197 ~ 16682178 (-) False esrp1

Expression Profile