RNA id: TU167506


Basic Information

Item Value
RNA id TU167506
length 1901
RNA type TUCP
GC content 0.41
exon number 2
gene id esrp1
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16586084 ~ 16682178 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGTGGGGTGGGGGTGCAATTATGTCAAATAGTtatagcatttaaatataacatactTAATATATCTGCCAGGCCACATGGTGAATAAGTTACTATTAAAATTGTGCAGAACATGAATATTTACtgttaataaaaagtgttttttaaaaaatgatgaaaagaaGCAGCCAAACCACTTTGCAaaataaaggtgtgtgtgtgtgtgtgtgtgtgtgctgagggTCATGGATGTCAGTTCGCCTGGATTGTGTACCGAATGATGTTTACAGCTGGCATATTATCCCGACTCTAGAGCATTACTTTAGTCTCTTCAGAAGTTGCTGCTCTCTGCTGATCCTTCTTCTTGATTCGGTAGATGACAATGATCATGGACAGAgctggaaggaaaaaaacattttctcagtttgCTTTCTCATtagttttctaaatattaatgaagGCAAAACTAAACATATCAGTCTTACTGATGAAGCCGAATATTCCTGCCAGGATGCCAATGGTGCCACTCATGCCCAGCTTCCAGCTGTGAGCTGCTGGCTCGATGTAACAGTAGCCCAGTTTTGTGCAGTTACATATACGcactaAAACTTTTGAGTGATACCCATTCCAGCTTTGTCTTTGATGTTGATGGGAACAGTGGCATTCATATCACTTGACGGCTTCTTCTTCAAAATCAGCTGTGCTGAGGTTCCTGAAGATGCACAAAACTGGCATAAATGAAATACAACAGTCATACTGTGTGCAAGCACTTTCTGTACTGAAGATCTGCTCACCGTCCAGAGGTTTGATCTCGAAGTTTGGTGACTTGCGGTTCATGGAGAAGGTGAAAGGCTCTCCGTAGGGGTCAGCGTCCTTATCTACAGCAGTGAGCTTCAAGGGGGTCATATCCTGAATGCAGATGAAGCCCTGTGTCTTCTGCAGCTTAGGGTAGTTGTCATTTACATCCAGCAGATGAATATCCACATTCATCTCAGCCTCCTGCTTGTCTCCCTCTGAGAGGAATAGAAATAGATTGTAATATTTCCCAAATGAGGCTCACCTGGAGTGACTCACCTGGAGTGGAGTGCATTGTTGATTTCTCACCTGTCTCGTAAGCGATGATTGTGAGAGAGATCTGCTCCACCGTTTCTCTGTCCAGAGCAGCTTTAGTCTTCAGCTCTCCAGAGTCAGCGTTCAGCTCCAACCAGTTATGTTCATCACCTTCCATCTTAAACCTgacaaaaagaacatttaaatgcagaaatgacataaaagacatttaagatTGCTATTAAGATGCTAAGCTTTACTGGCCCCCAAATCATTTTGGAGAACATCAAATTTTACACAAACTCGGATTTCATGCAGCTGAATCAAATTTCAGTACATTCtaacattttatgtacattcCCAGtttaacttttcatttaaatagttaTGCTTATCAGACAATGTAAAACTGTAATGACTTCATGTTGTGACTTTTGTGAGGGTCTTTAATATCTGTACCCCACTGTATGTCAAAGAATCAATAAACCTGAATCAACATAAAACAGCTGGAACGGTGCTTATCAATAAACTTCAGAAGCAGAAATATCAAAGCACTTCGAACgtctaatcaaataaatgatctgATTATGCAGGAGACGCGATACAAAGCATTACTTGATAGTTTTTCCCTCTGGATCCTTGGCTTCAGCTGTCATTATTACGGTTCCAACCGTGATGTTTTCTGGGACGTTAACGTTAAGAGTTTGCACTTCAAATTGTGGAGGTTCGTCCACATCCACCAGCTCAATGACAACAAATGTGGTGGCATTTTCATTATACTCCACTCCTTCGATCAGAGGCTCAGGATTACGGGCATCAATCTGAAGGTGGAAGACGCTCTGGAGCTCATAATCCAGTGGCTGAAAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167571 lncRNA downstream 85 16679684 ~ 16680112 (-) True G113470
TU167532 lncRNA downstream 72517 16606714 ~ 16607680 (-) True G113439
TU167526 lncRNA downstream 90583 16588685 ~ 16589614 (-) True G113433
TU167484 lncRNA downstream 126339 16552608 ~ 16553858 (-) True G113405
XR_006252836.1 lncRNA downstream 185458 16488118 ~ 16494739 (-) True LOC122360769
TU167574 lncRNA upstream 11752 16693930 ~ 16694290 (-) True G113473
XR_006252808.1 lncRNA upstream 42240 16724418 ~ 16737282 (-) True LOC122360493
TU167617 lncRNA upstream 139452 16821630 ~ 16822180 (-) True G113504
TU167706 lncRNA upstream 206143 16888321 ~ 16892578 (-) True G113569
TU167704 lncRNA upstream 212174 16894352 ~ 16895923 (-) True G113567
XM_043261266.1 mRNA downstream 29884 16646546 ~ 16650313 (-) True rnf41l
XM_043262079.1 mRNA downstream 50319 16616174 ~ 16629878 (-) True esrp1
XM_043262080.1 mRNA downstream 50320 16616174 ~ 16629877 (-) False esrp1
XM_043260035.1 mRNA downstream 104761 16571366 ~ 16575436 (-) True sgk2b
XM_043260005.1 mRNA downstream 109759 16561701 ~ 16570438 (-) True l3mbtl1b
XM_043261126.1 mRNA upstream 6037 16688215 ~ 16693128 (-) True pdp1
XM_043261130.1 mRNA upstream 15143 16697321 ~ 16698849 (-) False ino80c
XM_043261131.1 mRNA upstream 15143 16697321 ~ 16698849 (-) False ino80c
XM_043261129.1 mRNA upstream 15143 16697321 ~ 16698848 (-) True ino80c
XM_043260819.1 mRNA upstream 101842 16784020 ~ 16799200 (-) True tmem245
XR_006252795.1 other downstream 440691 16232972 ~ 16239506 (-) False fam8a1b
XR_006252800.1 other downstream 451731 16218661 ~ 16228466 (-) False atxn1b
TU167253 other downstream 538962 16139319 ~ 16141235 (-) True G113267
TU167269 other downstream 666446 16012964 ~ 16013751 (-) True G113275
TU167180 other downstream 818304 15857599 ~ 15861893 (-) True G113220
unassigned_transcript_2159 other upstream 308124 16990302 ~ 16990374 (-) True trnat-ugu_49
XR_006252805.1 other upstream 1675239 18357417 ~ 18366990 (-) False slc45a4b
XR_006252779.1 other upstream 1810448 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other upstream 1810448 18492626 ~ 18520287 (-) False mroh1
TU168645 other upstream 1967341 18649519 ~ 18650609 (-) True G114236

Expression Profile