RNA id: XM_043262080.1


Basic Information

Item Value
RNA id XM_043262080.1
length 3760
RNA type mRNA
GC content 0.47
exon number 15
gene id esrp1
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16586084 ~ 16682178 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCACACAAAACCAGCGCGATCCAAGCAGCCATTGCGGAGCGGAGCCAAGGGTTTCGGACTTGTTTGCATCGATTCTCACGCAATTGAAAGGCCACAGGACACATCGAGGCGAGTCCGAGCCCGGCACTGATCTGTCCGTAGGCGTGGGGTCACTGGACTTCTGGCTTCTCTGTCACCTGGAGTTGATCTCTAGGGTTTTGCTTTTGCTATCGGGGTGGTGtgacaatagttttttttttccttcttaaaAATGACGGTTAATCCAGATTATCTGGTGCTTTTATTCACCACCACATCTGGCGCGAGTGGGGACCAAATGGGATCAGATGAAAAGGAAATTGTACAGTTGGTTTGGCAGGTTGTGGATTTAGCGACTAAAAAGGCCGGTGAGGTAAATGAATTGCTAGTCAAACCGGATCACATTGAGCTCTCTGAGGAGTGTCAGGAGCTGAGTGGACTCACCGAGGAGACCTTGACAGAAGCTGAACTGCTCGAAGAGGCCATCGAACAGCTGAATCAGAGGTTATGTGCAGAAGTGGACACAAGTGCAGGAAACACCTTCTACCTCTGTACGGATGGACAGCTGCATATTCGTCAAGTCCTCCATCCCGAGGCTTCCAGCAAGAATATTTTGCTGCCTGAGTGTTTCTTCTCATTCTTTGACCTGCGGAAAGAGTTCAAGAACAAATTCCCTTCAGAAGGGGAGTTGAAAGACTTGAATCTTCAGGCCATAGCTGACTACCTAAATGTGGATGTAGATTCTTCTCTTCACCCTTTCACTACTCACAAGGTTCAGCAGATGTCAGAAATAGTTTTAGCACTTATCTCGGAGCCTGTCTGCCACCAGTTCTCCTTCCCAGAAAAAGTGAATGACAAGTTTGAGACTGGCACTTGcAGTAAGATGGAGAGGGTGGATGATAACACGGTGATCAGAGCTCGGGGTCTTCCATGGCAGTCCTCAGACCAGGACATCGCCCGATTCTTCCGGGGTCTCAACATCGCTAAaGGAGGTGCTGCGTTGTGTCTGAATGCTCAGGGCAGGAGGAACGGAGAGGCACTAGTGAGGTTTGAGAGTGAAGAGCACAGGGATTTGGCCCTGCAGAGACACAAGCATCACATGGGCACCAGATACATTGAGGTTTACAAGGCAACAGGTGAAGACTTTCTAAAGATTGCAGGagGTACCTCTAATGAAGTGGCCAAGTTTCTTTCGAGGGAGAATCAGGTTATTGTACGCATGCGTGGACTTCCGTTCACCGCCACAGCGGAGCAGGTGCTGCAGTTCTTCTCCCCGGCGTGTCCTGTGACAGACGGCGGTGAAGGCATTCTGTTTGTGCGTTTTCCCGATGGCAGGCCCACTGGGGACGCGTTCGTCCTGTTCTCCTGCGAGGAGCATGCTCAGAACGCActgaaaaaacacaaggacatccTGGGCAAGAGGTACATAGAGCTGTTCAAGAGCACTGCGGCTGAGGTGCAACAGGTACTGAACAGATACTCATCGGCCCCATTGATTCCCGTGGCCCCATCCCCCATTCTGTCTGTTGTGCCACCCCCCACGTTCGTGCCCCCAACGGCAGCAGTGACAGGTGTGCGGGACTGCGTGAGACTGAGGGGTCTGCCGTACGATGCCACCATACAGGACATATTGGTTTTCTTGGGGGAATACACCGCTGACATCAAGCCACATGGAGTGCATATGGTGCTCAATCAGCAGGGTCGTCCGTCGGGTGATGCTTTCATCCAGATGCGTTCAGCTGACCGGGCGTTCCTGGCGGCCCAGCACTGCCACAAGCGCAGCATGAAGGAGCGTTACGTGGAGGTGTTTGCGTGCTCCGCTCAGGAGATGAACATCGTGCTGATGGGGGGGACGCTCAACAGGAGCGGCCTCTCGCCGCCGCCATGTTTGTCCCCTCCATCATATGCATTTCCTCATGGGACAGCTGTTCTTCCTGCTGGAGCGGTCCTTCCTGCGGGAGCAGTGCTACCTGTGGAGCCAGCAGCTATCTACCCCTCTCAGTTCCTGCTGAGTCCCCGACCCCTGGCACCAACGACAGCCTTCTACCCTGCCAGCAACCCACTGTACATGAACTACACCACCTATTATCCCAGCCCACCTGGCTCGCCCCCTAACATCAGCTACTTCCCTACTGGCCACACCCCTTCAGCTGGTTCAGTCCTCTCAGCCCCACCCACAGCACTGATACGAATGCAAGGCCACGCCCCTTCCCACGCTTATAATAGCGGGGTTAAAGAAATCCTCAGCATGGTACATGGATATCAGCCCGGCAACAGCGACGCTTTGGTAACTCTCCCTTCTATGCTGTCGGCCAAGCAGCCTATTGGAGACCAGACTGTAGGAGGCGGAGCCTATCTTGACTTGCAGTTGCTTTAAGCCAATCGATTGACGAGGCCACACCCCTGCGGTGGAGTCAACAAACCCCTCAATACAAAGCAGTTTATGCCATTTATGCTATTTATAtaagaattttaaaagaattatgtattttgacatttaatgtatattgcacattgttttttttatgcattagaGCTAATATTCTACTCATACGGTTTGTTGCGTGagtttgtatgtttgtgtccATGCACGTGCAGTGATGTTCACTCAGGAAATAGCTTCTCATACCAGGGTCTAAACATTAAACCTGCCGAATCAGAGGCAGACTTTCGCTGATACCGTAAATTTAAGCCAAAGGAccagaaaaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaatgccTCCCTGTTGATGTGACTCTACCGTGAGTATGTGTAAATACGTAGAGACATTCTCaagcctctctctttttttttttttttttttctttgaaggtTTTAATTTGCATGAAGTTCATAGAGCTAGCTGTTCTAACATGTTTACAAGATTCGCCAAACTCTTACGCCACGCACAGTGTAGTCCGTGGATGTATGCAACACGTAGTTCTTCTAAGTCATTTCGCCAAAAAATAGCTCAGAACCAGAATCAGGAACAACTTTTGTGCTTTGTATCTGCGTATCTGTGTCATGCATGATAAACATATGTATTGTCCGTACCAATCAATGTACAAATTTCTATAGCTAAATGTGCTTGataatgtgtgcatgtgtactaAATGTAACCAGCtattgaatgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtctgtgtttagccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcaatgcatgtgtgtttatttactgcACTCAGAGAGTGTTTCGGGCCTGCTGTAATGCACACAGGTGTATTTTCACCCATTGTCTGTGTATTAAggagagtgtttgtgtgcatcTGCTGGAATGTGAACAGGTTAACTTGTTACCTGCAGCTGTATCCCATCTGTACCCTCCTGTTTGTTTATGCCAATGTGCCTCATTTATTATgctctgtgcttttttttttttaaatactaggAGTAATTTGCATGTTTAGGCTTTTATGAGCAGTAGGAGTAAAGTGTATGACAGTGAAATAGtcagtgtgatttatttgtACTAGTACCCACACATGCCAACGGGCAGTAGTTAAGCAAAAGCACTACTCTTTCATGTTACCGATCTGTTACCATCATATTtgtaattcaaaaaaaaaaaaaaaaaaatgtagaaatgagAAATCAAGAATTTGGCTGTTTGGagaaagtattattttattttgatattttataataacttaaataaaGGAAATTTAACAACCTT

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167532 lncRNA downstream 8494 16606714 ~ 16607680 (-) True G113439
TU167526 lncRNA downstream 26560 16588685 ~ 16589614 (-) True G113433
TU167484 lncRNA downstream 62316 16552608 ~ 16553858 (-) True G113405
XR_006252836.1 lncRNA downstream 121435 16488118 ~ 16494739 (-) True LOC122360769
TU167382 lncRNA downstream 127352 16488601 ~ 16488822 (-) False LOC122360769
TU167571 lncRNA upstream 49807 16679684 ~ 16680112 (-) True G113470
TU167574 lncRNA upstream 64053 16693930 ~ 16694290 (-) True G113473
XR_006252808.1 lncRNA upstream 94541 16724418 ~ 16737282 (-) True LOC122360493
TU167617 lncRNA upstream 191753 16821630 ~ 16822180 (-) True G113504
TU167706 lncRNA upstream 258444 16888321 ~ 16892578 (-) True G113569
XM_043260035.1 mRNA downstream 40738 16571366 ~ 16575436 (-) True sgk2b
XM_043260005.1 mRNA downstream 45736 16561701 ~ 16570438 (-) True l3mbtl1b
XM_043260003.1 mRNA downstream 47191 16561699 ~ 16568983 (-) False l3mbtl1b
XM_043261266.1 mRNA upstream 16669 16646546 ~ 16650313 (-) True rnf41l
XM_043261126.1 mRNA upstream 58338 16688215 ~ 16693128 (-) True pdp1
XM_043261130.1 mRNA upstream 67444 16697321 ~ 16698849 (-) False ino80c
XM_043261131.1 mRNA upstream 67444 16697321 ~ 16698849 (-) False ino80c
XM_043261129.1 mRNA upstream 67444 16697321 ~ 16698848 (-) True ino80c
XR_006252795.1 other downstream 376668 16232972 ~ 16239506 (-) False fam8a1b
XR_006252800.1 other downstream 387708 16218661 ~ 16228466 (-) False atxn1b
TU167253 other downstream 474939 16139319 ~ 16141235 (-) True G113267
TU167269 other downstream 602423 16012964 ~ 16013751 (-) True G113275
TU167180 other downstream 754281 15857599 ~ 15861893 (-) True G113220
TU167506 other upstream 50320 16680197 ~ 16682178 (-) False esrp1
unassigned_transcript_2159 other upstream 360425 16990302 ~ 16990374 (-) True trnat-ugu_49
XR_006252805.1 other upstream 1727540 18357417 ~ 18366990 (-) False slc45a4b
XR_006252779.1 other upstream 1862749 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other upstream 1862749 18492626 ~ 18520287 (-) False mroh1

Expression Profile