RNA id: TU167727


Basic Information

Item Value
RNA id TU167727
length 1490
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G113587
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16910335 ~ 16911882 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaccatttttatttttctctatttttgaCATGTGAAACTAAAATAAGGGGTGGATAAACCATAAAAGGCCATTGTTCTTTTCTGTTGGCCCTTTGGGACCGTAATCaaataacattcaaatgttGTTTGTGCTGAAGGAGGTCTCACAGAGCATTGATTTCAGTATTAGATTTGCCTCTCTGAGGCTTGTGTTATCAAAGCCTTACAGGGAAACCTCACCCAAATCTATCAGCCACCCCGGCAGAACATAGAAAGACACATGAAGTAAACCCAGTGTAAAAGGATTCTTATCTAAACCtgagcattgtttttcagaaacatcTTGATCAGATGTGGTAACTGCtaaggaaaaacacaaaagatcaTAAGAAATTCTACATGAAGCATTGGTGTTTCCACAAATACAGCAATTGAAACAGATTCTATGCacaggtttaatttatttaacttgtCTTACATATTTATAGTTATAAGCCATAAACTGTAAGTATTTCCATAAGGATCTattctgctatatatatatatatgtataatattaaatgaatcattacatttgtatattaattttcCATTATAACGGCTTATTAAGTGttattgaaattttatttatttttagcagcctgcgtcattattatatttttgaaatttgaaaagttAAGTTAAGGAACAAGCATTCATGGGCTCTGCAGAATATGGAAACTATATCGTGATTTTAACTTCATAATTTGTCATTGATAATGCTGTGTATTAATTGAGAGTTTCTCTTTTTATATCCATGATACATATAAACCTTACGAAGTATTTCACATAGAAtcaatgtttcatttatatcCACTCATAACCCATgaacaaattataaaataaaaagaaatgcatgagTTACAATACCACTTTAAGTGTTTATCGCGAAATTCTGCAAGAATTCTGCAATTTTACCACAACATAACCTAAATACCTGTAGTAAACAGAACCGAGTCACCTACTGCAAATCCTCAGTATGCATAACACATTTTACTGTTATATAGTTCATACAAAAATCACCTATAATCATTAACCACTTCTATCACCTACAGTCACATTACTGCTACAAAGGCCAATCAGCTGTTTGGCAGCACGTCAGATGATGGAATAAGGCCTTGTTTGCTTTGGCATAGAAATGAATGGTGAATTAAGGCAAAAGGAAAATTAGCAGGTCCACTTGTGCATGTTTGCACTGCGTGTAGGAGTTATTCTGCAGTTGTGGTTGTTTTATGTACGTTGAGCGTCTGGTGTTTATTTCAGAACACGCGTGGGTCGGCAACTCCGCCGTCTCAAAACAAATGTGCTCGAGTGTGTCACTGAGTGTCGTTCTTACTGCTGTCATTGCTCTTAAGTTGTTGTAGCTGCAGGTCGATTCGTTCTTTCCTCTTCCGTTGGATCAGGTTGCCCCCGGCAAAACCAAGCAGTCCACCCCCCACGGCAGCGGCGACCCCCGCTACTTTAAATCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167704 lncRNA downstream 14412 16894352 ~ 16895923 (-) True G113567
TU167706 lncRNA downstream 17757 16888321 ~ 16892578 (-) True G113569
TU167617 lncRNA downstream 88155 16821630 ~ 16822180 (-) True G113504
XR_006252808.1 lncRNA downstream 173053 16724418 ~ 16737282 (-) True LOC122360493
TU167574 lncRNA downstream 216045 16693930 ~ 16694290 (-) True G113473
TU167728 lncRNA upstream 1778 16913660 ~ 16913962 (-) True G113588
TU167747 lncRNA upstream 77828 16989710 ~ 16989978 (-) True G113604
TU167748 lncRNA upstream 79909 16991791 ~ 16992379 (-) True G113605
TU167764 lncRNA upstream 155641 17067523 ~ 17078008 (-) True G113617
TU167785 lncRNA upstream 275063 17186945 ~ 17187257 (-) True G113637
XM_043261774.1 mRNA downstream 89580 16817726 ~ 16820755 (-) True alg2
XM_043260821.1 mRNA downstream 106228 16799360 ~ 16804107 (-) True LOC122360322
XM_043260819.1 mRNA downstream 111135 16784020 ~ 16799200 (-) True tmem245
XM_043260820.1 mRNA downstream 111137 16784020 ~ 16799198 (-) False tmem245
XM_043261129.1 mRNA downstream 211487 16697321 ~ 16698848 (-) True ino80c
XM_043261046.1 mRNA upstream 3636 16915518 ~ 16928686 (-) False erp44
XM_043261045.1 mRNA upstream 3636 16915518 ~ 16928686 (-) True erp44
XM_043260426.1 mRNA upstream 39297 16951179 ~ 16968820 (-) False tex10
XM_043260425.1 mRNA upstream 39297 16951179 ~ 16968820 (-) True tex10
XM_043260427.1 mRNA upstream 66890 16978772 ~ 16981410 (-) True rbm12ba
TU167506 other downstream 228157 16680197 ~ 16682178 (-) False esrp1
XR_006252795.1 other downstream 670829 16232972 ~ 16239506 (-) False fam8a1b
XR_006252800.1 other downstream 681869 16218661 ~ 16228466 (-) False atxn1b
TU167253 other downstream 769100 16139319 ~ 16141235 (-) True G113267
TU167269 other downstream 896584 16012964 ~ 16013751 (-) True G113275
unassigned_transcript_2159 other upstream 78420 16990302 ~ 16990374 (-) True trnat-ugu_49
XR_006252805.1 other upstream 1445535 18357417 ~ 18366990 (-) False slc45a4b
XR_006252779.1 other upstream 1580744 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other upstream 1580744 18492626 ~ 18520287 (-) False mroh1
TU168645 other upstream 1737637 18649519 ~ 18650609 (-) True G114236

Expression Profile