RNA id: TU168682


Basic Information

Item Value
RNA id TU168682
length 1043
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G114259
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18739754 ~ 18740829 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATACTGAAAATgcttacaaatatatttatatatttcccaAAAGTTTTTTGCCCTCTACATCGTGCAAAAAAACTTCATGACTCACGCCACCCCAGCGGCCATGATCAGAGAAAGTAAATTTTACTTATTCATATCAAAAGATCATGTGGCTTTGTAAAGATCCTCCAGTTCCCGAATAACAAATCAGTCTATTTTGTTCCCTACATCATTAAtttaaagtcaaatttaaaTGTCGCCGCGGTCGTAGTATCGGTTTCTCAGTGCCACAGATTGGTTTCATTGCGGGAACCAGAACACAATAACATGCGAGGAAATATCATACGGTATTATTCAAACACACCACGCAGAATACATCAGGTAACAACACTTGCACCTGTAGGCATGATTTGCTTGTATCTCATTCGGGCATGACATAGTTAGGCTAAACCATGCCTTTTTAGACACGACTGAGGGATCCATGCATGCATAAACTGCATACATGTGCCTCTTtcttggaaaaacaaaacaaataaaataataaaacaattgcaCACTCATGCAAAACACCAGCTGCAAGCTCACAGTGCACAATGCATCTTGGGTTCACCGAAACAACCCAGTCTGAGAAACATTTAGCAAGATCAAATACAGGAGCTCTGACAACAACGCATGACTGGTGCATGAAGGTGTATGAAGTGCGGGGAACACAATAAAGACACTTCCAGAAACCTGGAACATAGAAACagacaataaaagcaaacaGACAGGTGCAAAtacaataaagagaaaatatctGAATCAAATACAGTGCATATCAACACACAGAATACAGACACGAGCGTAAATCACAGATATGATATCAATCCTGACGTGTAGGCTGGACAGGTCGTACAGTACCTCCCACTCTTTAGCTGAAATGTCTACTGTTTGCTGCTCCTCGTTTGCCTCAGACTCCTCGATTTTCTTCACCACGATGAAGCCAGGATCACGGCTGATGCTTCCTACTCCATCCCCAAAAACATCTGGGCTCCACTGGATGAAGAAAACGTACAGGTGGTCTGac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252842.1 lncRNA downstream 51359 18687166 ~ 18688395 (-) True LOC122360941
TU168638 lncRNA downstream 190815 18548188 ~ 18548939 (-) True G114231
XR_006252807.1 lncRNA downstream 195074 18528871 ~ 18544680 (-) True LOC122360486
TU168419 lncRNA downstream 364140 18373968 ~ 18375614 (-) True G114075
TU168395 lncRNA downstream 500485 18195515 ~ 18239269 (-) False lmna
TU168713 lncRNA upstream 72391 18813220 ~ 18821088 (-) False rpz
TU168711 lncRNA upstream 72400 18813229 ~ 18821088 (-) False rpz
XR_006252755.1 lncRNA upstream 244574 18985403 ~ 18987922 (-) True LOC122360016
XR_006252754.1 lncRNA upstream 244574 18985403 ~ 18987919 (-) False LOC122360016
XR_006252756.1 lncRNA upstream 245000 18985829 ~ 18987926 (-) False LOC122360016
XM_043261779.1 mRNA downstream 41347 18684573 ~ 18698407 (-) True LOC122360940
XM_043261587.1 mRNA downstream 68480 18669607 ~ 18671274 (-) True LOC122360747
XM_043261559.1 mRNA downstream 77264 18653732 ~ 18662490 (-) True LOC122360727
XM_043261385.1 mRNA downstream 96465 18633238 ~ 18643289 (-) True phf20l1
XM_043261418.1 mRNA downstream 106839 18601810 ~ 18632915 (-) True tg
XM_043261702.1 mRNA upstream 11961 18752790 ~ 18756397 (-) True LOC122360855
XM_043261703.1 mRNA upstream 40170 18780999 ~ 18782095 (-) True rpz5
XM_043261704.1 mRNA upstream 56432 18797261 ~ 18798074 (-) True LOC122360857
XM_043261507.1 mRNA upstream 71409 18812238 ~ 18821110 (-) False rpz
XM_043261195.1 mRNA upstream 104915 18845744 ~ 18859744 (-) False nr2f5
TU168665 other downstream 41438 18693912 ~ 18698316 (-) False LOC122360940
TU168666 other downstream 41438 18693912 ~ 18698316 (-) False LOC122360940
TU168660 other downstream 68509 18669681 ~ 18671245 (-) False LOC122360747
TU168645 other downstream 89145 18649519 ~ 18650609 (-) True G114236
XR_006252779.1 other downstream 219467 18492626 ~ 18520287 (-) False mroh1
TU168710 other upstream 74387 18815216 ~ 18821088 (-) True rpz
TU168714 other upstream 74387 18815216 ~ 18821088 (-) False rpz
TU168715 other upstream 74387 18815216 ~ 18821088 (-) False rpz
XR_006252818.1 other upstream 676133 19416962 ~ 19421094 (-) False cd22
TU169372 other upstream 1425966 20166795 ~ 20167614 (-) False G114715

Expression Profile