RNA id: XM_043261507.1



Basic Information


Item Value
RNA id XM_043261507.1
length 1241
RNA type mRNA
GC content 0.46
exon number 6
gene id rpz
representative False

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18812238 ~ 18821110 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTCTTTTGCAGTGTTTGCTGGGAAGAAGAAGTACAGTCCGGATTGGGACTTTGGAGAGGGAGGTAGCAATCTGAAGAGaaccttggaaagaaagaaaacaagatctCCATTTGGGAAATCCAGTTTTTCTCACTGCAACGTGAACTAACCGATAAGACTATCTTCCTCCTCGGACACAATGGCTGACAATGAGGTATATGAGGACCCAGAGAAGCTGAAGAGGGGTCTGGTGAAGGTTCTGGAATGCGTGGCCACCATCTCGCCCGCAGCAGCGGTGGTCAATCCCATCTTGGCGTGGCTGGATCTCTCATCCGGAGTGGTGCTGCACCACGTGGACCACGAGGACATCCAGAAACTCAAGCGCGAGTTCGCAGCGTGGAATCGAGCAATCGACGAAATCTCACAGCAGAACCGCCAAGCCCTGCTGCAAATCAGGAAGGAAACGGTGGACAAACAGTACCACGAGGTGGAAGAAAACATTCGCAATCAGTTCCGCAAATTCATGGAGATCGTGGAGGCCAAACCGGAGAACGTGCAGCGCAAGAAGGATGATTTCGTAGAGAGCTTCATCAATGATAAAGATGACCAGAACATGTACACGCTTTATGAAGGTGTGATGGGGAAGCGCAAGCTCTTCAGTCAGCCCATCCTAGACGTCTACATGAAGAAGCACTCGCAGGGTGACCAGCGCGTCATGGAAAACCTGTGCACTCGACTCGCTCACCTGTTCTGCATCGGTTTCATCGCTCTGATGGGCTACTATGGCATCATGGGGGATGATCTGCAATCTCGAAACGAAGAGTGGGAAGAGAACATGAGGAACGTGCAGGAGAAAATGCAGGAGGTGCTGAGGAGATGCAAGTGATCGTGAAAGCTTTCTGCGCAACCCAAGCTCTTTATTGCCTTTGCCTTTTCGTCTTACACTAATAGACTTCATCGACATGCAGCTTTATCTCCCTGATGACTGAAGGTCATGCTCAAGTGTACACAGTCATTTCCTTTagctcttgtttttttgtttttaatcgcACAATTGCATTTCTTCACGCCTCGCCTCCCTTTATCACTACATCACCGAGTTATTTCACACTAATCTAAAGAATGCTGGTTGTGGTATAAATATTATTCAAGTTAATAAGCAGTGTCATCTTGAAAACTGACTACATGATGAACTACTTGTTTCATGGATGAATACATGgtatattcaaatgtattctataaataaatataatttaagaaac

Function


GO:

id name namespace
GO:0033333 fin development biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168682 lncRNA downstream 71409 18739754 ~ 18740829 (-) True G114259
XR_006252842.1 lncRNA downstream 123843 18687166 ~ 18688395 (-) True LOC122360941
TU168638 lncRNA downstream 263299 18548188 ~ 18548939 (-) True G114231
XR_006252807.1 lncRNA downstream 267558 18528871 ~ 18544680 (-) True LOC122360486
TU168419 lncRNA downstream 436624 18373968 ~ 18375614 (-) True G114075
XR_006252755.1 lncRNA upstream 164293 18985403 ~ 18987922 (-) True LOC122360016
XR_006252754.1 lncRNA upstream 164293 18985403 ~ 18987919 (-) False LOC122360016
XR_006252756.1 lncRNA upstream 164719 18985829 ~ 18987926 (-) False LOC122360016
TU168880 lncRNA upstream 171752 18992862 ~ 19063171 (-) True G114399
TU168882 lncRNA upstream 191545 19012655 ~ 19041766 (-) True G114401
XM_043261704.1 mRNA downstream 14164 18797261 ~ 18798074 (-) True LOC122360857
XM_043261703.1 mRNA downstream 30143 18780999 ~ 18782095 (-) True rpz5
XM_043261702.1 mRNA downstream 55841 18752790 ~ 18756397 (-) True LOC122360855
XM_043261779.1 mRNA downstream 113831 18684573 ~ 18698407 (-) True LOC122360940
XM_043261587.1 mRNA downstream 140964 18669607 ~ 18671274 (-) True LOC122360747
XM_043261195.1 mRNA upstream 24634 18845744 ~ 18859744 (-) False nr2f5
XM_043261193.1 mRNA upstream 24634 18845744 ~ 18857984 (-) False nr2f5
XM_043261194.1 mRNA upstream 24634 18845744 ~ 18856404 (-) True nr2f5
XM_043260189.1 mRNA upstream 60717 18881827 ~ 18883697 (-) False bola1
XM_043260191.1 mRNA upstream 60717 18881827 ~ 18883552 (-) True bola1
TU168665 other downstream 113922 18693912 ~ 18698316 (-) False LOC122360940
TU168666 other downstream 113922 18693912 ~ 18698316 (-) False LOC122360940
TU168660 other downstream 140993 18669681 ~ 18671245 (-) False LOC122360747
TU168645 other downstream 161629 18649519 ~ 18650609 (-) True G114236
XR_006252778.1 other downstream 291951 18492626 ~ 18520287 (-) False mroh1
XR_006252818.1 other upstream 595852 19416962 ~ 19421094 (-) False cd22
TU169372 other upstream 1345685 20166795 ~ 20167614 (-) False G114715
TU169487 other upstream 1620855 20441965 ~ 20452450 (-) False G114793
TU169489 other upstream 1620855 20441965 ~ 20452450 (-) True G114793
TU169673 other upstream 1830867 20651977 ~ 20653574 (-) True G114901

Expression Profile