RNA id: TU168954


Basic Information

Item Value
RNA id TU168954
length 2991
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G114458
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19280428 ~ 19283527 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAACTTAACTgaaaagtattttgtattttattttcattaattttttttgcctgGACATTATCATTGAGAAACaggtcaaataaatatatgaataaccacatttatttattttatttatttccatctaTGTTTAATGCATGCTGTGTATAATGCATTTCAGTATTTCATTGTACttagatttttacaaaaaaaataaataaaataaaataaatacatttaacttcCATCAAGGCCAGCCAATGTTTGAATATCTCTCATCCAAAAAATTCATTTAGACATAAAATGACAACCAAATCAGTTTTGCAGGCCCATGACTgagaatttttattaaaacgcCACTTTGAGAGATTATCAACATTTATAGAGTAATtctataaattcaaaataacagcagctCAGTTTTTTGGGAAGGGACTGTaattaatgcataaattaaatggttgaaaaatattgaaagaatcaacaataaaataaagtacaggTGAGAAGTGAAGCAAGTTCGCCATTAGCGCTTTctagaaaaaaacccaacagtCTTCCGCTCGATCAAATCCAATGGAAATTTTCAGCAGATGAAGTCTGAAATCCTTAGATTTTGCTTGCGTCTTCATCATCTTTCTCCGTGGTTTGCACTGCCCCCCTGTGAAGAGAACAGTCTGTTACTcttttttgcatatattgtcAAACATAAGGTTTTGGTTAGGTGTAAAATGCGCGTGTAAGAACTCAGAGCTACTTACAACACAGAACTCCAACCCCTCCGGCTACGAGCAGGGCTGTGAAGATCAAACCCCCGATCCTCAGCGCCTCATAGTCTAAAACCAGAAGCATTATTATAgattggatatttttttttatatacaatgaACGTTATATTATTAGGATCTCATGAGCATCTGCCTCCGAGGACTTACTGTAAACGAAAGGATCTGCAAAGGCAATTAAATAAGAAGAAAAGTTAGATCGTTGTTGAAAACAGACCACATTTCTGCCAGAAAAGTAATATTCTCAGTGCATGAGACTGATAGACTCAAGTAGAATAGCGTTACagttgaataaaaacaaaatcctcTGGCTTACTTGCTTCAGCTTGACCGAAGAATGCCAAGAAGACTGTAAATGACAATGAAGATtcgtaaaaaaaacatacacaaagaaGAAAATACTTCATGACATTAATAAGCTAATGAACTAGCAGACATTTTCAGAAAAGGGTTTACACTCAAAATACTGCGCTCATAGTTTTTCAAGATTTAgtatgaaaatgtgtattttgaaacgtttttagaaagaaaatacGAGCATTTTTAACCATAATTTTactaaaaagctgtttttgtctTCCATCAAGTCAGCAAGTATACTGTAAATATGGACAGTCTTCTCTGAATGCTTGACCTTCATGCCCAAGGGCACAGATCTGGCTGTAATCTTTACTGTGTACATAAATAGTCACGACTTACCTGTAAGAAGAACTAGTTCTGTGAGCTGGCTCATTTTTACCTCTCCTGAtcaaggacacacacacacacacacacatacgcactaaatgagacattttgtttttatattacaaaaatagttgctgtaatatattaatttctaagttgctgtaatatattaatttcaattaattatgtaattatttaccctcattttattttaaacccaaTATAATAAGGTCTGgtttttcaaaatgacaaaaagcaccTTAAATTAGTCATATAAgtgatttataatatttataataagtgttttaaaGCCATTCTGAAGCTCTCTCTGATGCAATCATCATGTCAGAAATGTCAATGCTTAGTATGTGAATGAATCTTTTGAGTCATATCTTCGAATCTAACGAATCAGTTGATTCAGATCACACAACAGTTCTTGAAATCGACCTGAAGAGTGagtaaaaatgactaatattgaATATGTGTCTTTACAGTAAACGTGTTAAATAGCTTTATACTGAAATGATTCATACGTCAATACATTATATAGGGGCCGGCTTCCAGCACATATTCTGTTCCCATGTACGGGTCAACAGCGAGACGAGGAATGTTTGTTAAGAAACTCCAGCTGTATAAGTGCAGCTGAGAGAAAACAGCATTCGTGTTTTGAAAGTAAACAGAAAGCGTGGGTCAAAGCAGTCAGGACGCAGCACGTCCCAGGACACTGCTGGTGTACCCTTGAACGCCTGGAGGTGTTTTGGAAAGTTTGCCCTCCCACCTCCCCTGGTTATAGAATCGTCTCGAAATGCTTCGGATTTGTAGCTcagctctttctttttcattgacCACACGCGGGCCCTGAAGTCTGGACGCAATTTCCGTTCGCTTGAGAAAATTCTGACCCTCGAGCTGTTCCAAGCCCGTACGAGTTTCTCTCTTCTGCTGAgcgcaaaaaatataaataaatatacaaagctGATGACCAAACATGTGCCGGtggccattgacttccatggtcCATGGTATTTTTTCTACGTCGGtggctaccagcaactgtttgctTATCAGcagtctttaaaatatcttcttttgtgtttaacagaagaaagaaacacttgaggttgagtaaattagaatttttgcatgaactatccttttaaacaTGGCTTTCTCTGAACTATTACGGGACTTTTATGTAGAACAGTTCGCATATCTTCTAAATGGCAGGTGCGGAGGTCACCTTCATCTATCGACCTGATTCTAAGAAGGAATCTTTATCTAATCGCTGTTCATTTATGCTCAAATAACTCAGGTTATGTATTAATTCGCAAACGGCAATGAATCAAACATTAATGAAGATTTTTACACTGGCATGCAAGATGAGTAAACGCTATTAAAGGAAGTAGTTCTTCATAGCATCATTCCCGTGTCACTTCGGCACAGTCCGATATATCAGAAGACCCTGATCTTACCTTAGCAGAGGAACTGATGGCTCTCTGAGCAGTAGATGTTGGATGAGGCTCCTCAGGTGGGCTGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168924 lncRNA downstream 17598 19206119 ~ 19262830 (-) True G114430
TU168880 lncRNA downstream 217257 18992862 ~ 19063171 (-) True G114399
TU168882 lncRNA downstream 238662 19012655 ~ 19041766 (-) True G114401
XR_006252756.1 lncRNA downstream 292502 18985829 ~ 18987926 (-) False LOC122360016
XR_006252755.1 lncRNA downstream 292506 18985403 ~ 18987922 (-) True LOC122360016
TU168959 lncRNA upstream 9466 19292993 ~ 19294087 (-) True G114462
TU168929 lncRNA upstream 21979 19305506 ~ 19307497 (-) True G114433
TU168968 lncRNA upstream 24391 19307918 ~ 19308512 (-) True G114468
TU168934 lncRNA upstream 52350 19335877 ~ 19343773 (-) True G114438
TU168972 lncRNA upstream 65286 19348813 ~ 19349105 (-) True G114472
XM_043260230.1 mRNA downstream 18634 19259324 ~ 19261794 (-) True LOC122359968
XM_043261885.1 mRNA downstream 30779 19243942 ~ 19249649 (-) True dnase2
XM_043260179.1 mRNA downstream 69242 19199873 ~ 19211186 (-) False phf1
XM_043260178.1 mRNA downstream 69245 19197851 ~ 19211183 (-) True phf1
XM_043260783.1 mRNA downstream 84999 19095755 ~ 19195429 (-) False syngap1b
XM_043261313.1 mRNA upstream 133435 19416962 ~ 19421094 (-) True cd22
XM_043260250.1 mRNA upstream 192291 19475818 ~ 19479474 (-) True upk1a
XM_043261248.1 mRNA upstream 204230 19487757 ~ 19490733 (-) False zgc:101716
XM_043261247.1 mRNA upstream 204230 19487757 ~ 19490728 (-) True zgc:101716
XM_043261243.1 mRNA upstream 364045 19647572 ~ 19657724 (-) False dpys
TU168710 other downstream 459340 18815216 ~ 18821088 (-) True rpz
TU168714 other downstream 459340 18815216 ~ 18821088 (-) False rpz
TU168715 other downstream 459340 18815216 ~ 18821088 (-) False rpz
TU168665 other downstream 582112 18693912 ~ 18698316 (-) False LOC122360940
XR_006252818.1 other upstream 133435 19416962 ~ 19421094 (-) False cd22
TU169372 other upstream 883268 20166795 ~ 20167614 (-) False G114715
TU169487 other upstream 1158438 20441965 ~ 20452450 (-) False G114793
TU169489 other upstream 1158438 20441965 ~ 20452450 (-) True G114793
TU169673 other upstream 1368450 20651977 ~ 20653574 (-) True G114901

Expression Profile