RNA id: TU169080


Basic Information

Item Value
RNA id TU169080
length 800
lncRNA type sense_over
GC content 0.32
exon number 2
gene id dpys
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19596432 ~ 19657724 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAAATAACTGTTTCCACCTGTGATCATAAATTCTTCTTGAAATTGCAACTTTACTAGCAAaggttaaataataataataataataaattacataatatacaaaaaaatatgaaaatagaaaagttttaaaaagtttaaaactgtaataatatttcacaatattactgtttttagcGTATttgcaatcaaataaatatagcctgTAAGAAGGCGGACTTTCAACGTCATTGACAAAGTCTTACCAGCCCTACACTTTTTGAACATACAGGTCTAAACGTCTGCCTGTGCTCATTGCTCATTTTTACCTCAATATAAGTTTGTTAACCCCTGAAGGAGTAAAATGAATAGTTTGGAAAAGGTGTGGTCCATACAGCACAAACTGATCACTAAGGACCCATGGCCTATTATCCACTTGCCCCCTATGTAGTAGTTCATAACAAACAGGACACATCCTTTCTGTATACAATGCAATGCTAAGGTAGGCTTTCTGCCAAAAAGTAGTGTGTGAGTTGTTGACATGTAAAACCTGCAATTATGGTTGCTTGACTGGTGTTTGCTAACTTCAAGCATATTTAAACAGCCTCAGGGTCCATCCTGTGTTTATGGAAGAGTAAAGGACACCAAAAGCTGGgctgcaattaaaacaaaaataaattattttttgtttgtacaaTTTAAGTTATTACAGTTAAAGCCAAAACATCATCTGTAAGAACCTGAAAGCAGATGCTTACAGCTACTTAAGTTTGATTTCACACCTAGtacttttatgaaaaaaaaaatatatatatatataata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168991 lncRNA downstream 121334 19392432 ~ 19475098 (-) True G114486
TU168981 lncRNA downstream 143550 19379415 ~ 19452882 (-) True G114479
TU168980 lncRNA downstream 214069 19379415 ~ 19382363 (-) False G114479
TU168963 lncRNA downstream 230137 19360728 ~ 19366295 (-) True G114464
TU168961 lncRNA downstream 241810 19352120 ~ 19354622 (-) False G114463
TU169193 lncRNA upstream 35823 19683622 ~ 19683930 (-) True G114607
TU169194 lncRNA upstream 45339 19693138 ~ 19693393 (-) True G114608
TU169197 lncRNA upstream 71387 19719186 ~ 19719936 (-) True G114611
TU169218 lncRNA upstream 312068 19959867 ~ 19971957 (-) True G114626
TU169265 lncRNA upstream 453245 20101044 ~ 20104270 (-) True G114663
XM_043261248.1 mRNA downstream 105699 19487757 ~ 19490733 (-) False zgc:101716
XM_043261247.1 mRNA downstream 105704 19487757 ~ 19490728 (-) True zgc:101716
XM_043260250.1 mRNA downstream 116958 19475818 ~ 19479474 (-) True upk1a
XM_043261313.1 mRNA downstream 175338 19416962 ~ 19421094 (-) True cd22
XM_043260230.1 mRNA downstream 334638 19259324 ~ 19261794 (-) True LOC122359968
XM_043260110.1 mRNA upstream 217927 19865726 ~ 19886663 (-) True si:dkey-122a22.2
XM_043261812.1 mRNA upstream 363496 20011295 ~ 20020232 (-) True sqlea
XM_043261878.1 mRNA upstream 374445 20022244 ~ 20027005 (-) True rnf144b
XM_043261589.1 mRNA upstream 388549 20036348 ~ 20039187 (-) True ccdc127a
XM_043261591.1 mRNA upstream 392148 20039947 ~ 20041361 (-) True mrpl32
XR_006252818.1 other downstream 175338 19416962 ~ 19421094 (-) False cd22
TU168710 other downstream 775344 18815216 ~ 18821088 (-) True rpz
TU168714 other downstream 775344 18815216 ~ 18821088 (-) False rpz
TU168715 other downstream 775344 18815216 ~ 18821088 (-) False rpz
TU168665 other downstream 898116 18693912 ~ 18698316 (-) False LOC122360940
TU169372 other upstream 518996 20166795 ~ 20167614 (-) False G114715
TU169487 other upstream 794166 20441965 ~ 20452450 (-) False G114793
TU169489 other upstream 794166 20441965 ~ 20452450 (-) True G114793
TU169673 other upstream 1004178 20651977 ~ 20653574 (-) True G114901
TU169801 other upstream 1364808 21012607 ~ 21017105 (-) True G115003

Expression Profile