RNA id: XM_043261242.1


Basic Information

Item Value
RNA id XM_043261242.1
length 2402
RNA type mRNA
GC content 0.42
exon number 9
gene id dpys
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19596432 ~ 19657724 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaaaaagcccccaGAAAGAGACGGCTTCATGCACTACCAACACCGATAGACATCGATACGTGCTTTTAGAGTTTGTATCCTACAGATATACCGAAGAAACAAAGACGGGGCGTAATTTGGACTCCTTTTAATAATCGTCAGCGAGCAGAAAATATGACAGCTCAAAGCGGGATTTTGATTAAAGGAGGGAAGGTGGTAAATGAGGATTTCTCGGAGGTGGCAGACGTGTATATTGAAGATGGGGTTATCAGAGGAGTTGGATCGGGTCTGCGGGTAGCAGCCGGCACACGGGTCATCGATGCCACAGACAGACTCGTGCTGCCGGGTGGAatagacactcacacacacatggagCTGTCATTCATGGGCACCACAGCTGTGGATGACTTTCATACCGGCACCAAGGCCGCAGTCGCAGGAGGCACGACCATGATCCTGGACTTTGTCATCCCACAGAAGGGGTGTTCTCTCTTGGAAGCCTATGAGCGGTGGAGAACAACGGCTGACCCCAAAGTCTGCTGCGATTACTCCCTTCATATGGCAGTAACCTGGTGGGATGACACTGTCAAAAAGGAAATGGAGACTCTTGTTCGTGACAAAGGTGTCAACTCTTTTAAGATGTTCATGGCGTACAAAGACGTCTTTATGCTACGCGACAATGAGCTCTGTGCCGTATTTGCTCATTGTAAAGAGATCGGAGCAATAGCTCAAGTCCATGCAGAGAATGGAGACCTCATTGCAGAGGGCGCAAAGCGTATGCTCTCTCTGGGCATCACGGGTCCCGAGGGCCATGAGATGTGTCGTCCGGAGGAAGTGGAGGCCGAGGCCACCCAGCGTGCCATCACTATCGCCCATGCCGCTAACTGCCCGCTGTATGTAGTGCACGTCATGAGCAAATCTGCAGCGAAGGTGGTGGCTAATGCTCGCAGAAACGGCCGAGTGGTGTTTGGAGAGCCCATTGCAGCTGGACTGGGCACAGATGGCACTAACTACTGGCATAAGGATTGGAGTCACGCTGCTGGTTTTGTCATGGGCCCACCTTTGAGACCAGACCCCAGTACCCCTGGATATCTGATGGATCTGCTGGCAAATGATGATCTAAGCGTGACGGGGACAGATAACTGCACATTCTCAATATGCCAGAAAGCCCTTGGAAAAGACGACTTCACCAAAATCCCGAACGGAGTCAATGGCGTGGAAGACAGGATGTCTGTTATCTGGGAAAAGGGAGTGCACAGCGGAAAAATGGACGAAAACCGGTTTGTAGCTGTCACCAGTACTAACGCAGCAAAAATCTTCAACCTTTATCCTCGAAAAGGGAGAATTGCTAAAGGCTCTGATGCAGACCTGGTCATATGGGACCCAAAGGCCACCAGGGTGATTTCAGCAAAGACTCACCACCAGGCTGTGGACTATAACATTTTTGAAGGAATGCTGTGCCATGGGCTTCCAGTGGTTACAATCTCCAGGGGGAAGGTGGTTTATGAAAACAGACAACTGTTCACAAAACCAGGAATGGGGCGATACATCCCACGGAGACCCTTTTCTGAATTTGTGTACAAAAGAATTAATCAGCGGGAAAAGGTTGGAAAGCCCTGCGCTGTGTGCAGAGAACCATACACTGGTGAAATAATATCCATATGCCCAAAGAAATCCTGAATCATGGAAGAAAGATGAATTGAcagtatacttttaaaaacaaaagccagTAATAACCAAAAACGGATTTGCCAtagaagaaacatttaaagtttttctCTGTAAAGAACCCAGAAACCACTGCACTGCTCTAAAGAACCTTAACATCTATACACTCAATGATGTGTATAGTGATGATCATTTCTGGCATTctcctgttttgtgttttgaatcaCACACCAAAAAGGACATACAgtattgtcaaatatttttagatacaaatacacttttatattgTCATGATCATACTCTgaaaagacatgaaaaaaacGTATCCAGCTAAGATGcagaaaatgatcaaaagttaCATGAAAGACATATTACgaaatactgtatgtatatttaaaaaaaaatgcttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacataatatacatacataattgcGTGTGTATAAATAACTGTTTCCACCTGTGATCATAAATTCTTCTTGAAATTGCAACTTTACTAGCAAaggttaaataataataataataataaattacataatatacaaaaaaatatgaaaatagaaaagttttaaaaagtttaaaactgtaataatatttcacaatattactgtttttagcGTATttgcaatcaaataaatatagcctgTAAGAAGGCGGACTTTCAACGTCA

Function

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
K01464 DPYS, dht, hydA; dihydropyrimidinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169068 lncRNA downstream 4082 19602438 ~ 19643490 (-) False G114539
TU169067 lncRNA downstream 4082 19640914 ~ 19643490 (-) True G114539
TU169087 lncRNA downstream 28495 19609105 ~ 19619077 (-) True G114550
TU168991 lncRNA downstream 172474 19392432 ~ 19475098 (-) True G114486
TU168981 lncRNA downstream 194690 19379415 ~ 19452882 (-) True G114479
TU169193 lncRNA upstream 25899 19683622 ~ 19683930 (-) True G114607
TU169194 lncRNA upstream 35415 19693138 ~ 19693393 (-) True G114608
TU169197 lncRNA upstream 61463 19719186 ~ 19719936 (-) True G114611
TU169218 lncRNA upstream 302144 19959867 ~ 19971957 (-) True G114626
TU169265 lncRNA upstream 443321 20101044 ~ 20104270 (-) True G114663
XM_043261248.1 mRNA downstream 156839 19487757 ~ 19490733 (-) False zgc:101716
XM_043261247.1 mRNA downstream 156844 19487757 ~ 19490728 (-) True zgc:101716
XM_043260250.1 mRNA downstream 168098 19475818 ~ 19479474 (-) True upk1a
XM_043261313.1 mRNA downstream 226478 19416962 ~ 19421094 (-) True cd22
XM_043260230.1 mRNA downstream 385778 19259324 ~ 19261794 (-) True LOC122359968
XM_043260110.1 mRNA upstream 208003 19865726 ~ 19886663 (-) True si:dkey-122a22.2
XM_043261812.1 mRNA upstream 353572 20011295 ~ 20020232 (-) True sqlea
XM_043261878.1 mRNA upstream 364521 20022244 ~ 20027005 (-) True rnf144b
XM_043261589.1 mRNA upstream 378625 20036348 ~ 20039187 (-) True ccdc127a
XM_043261591.1 mRNA upstream 382224 20039947 ~ 20041361 (-) True mrpl32
XR_006252818.1 other downstream 226478 19416962 ~ 19421094 (-) False cd22
TU168710 other downstream 826484 18815216 ~ 18821088 (-) True rpz
TU168714 other downstream 826484 18815216 ~ 18821088 (-) False rpz
TU168715 other downstream 826484 18815216 ~ 18821088 (-) False rpz
TU168666 other downstream 949256 18693912 ~ 18698316 (-) False LOC122360940
TU169372 other upstream 509072 20166795 ~ 20167614 (-) False G114715
TU169487 other upstream 784242 20441965 ~ 20452450 (-) False G114793
TU169489 other upstream 784242 20441965 ~ 20452450 (-) True G114793
TU169673 other upstream 994254 20651977 ~ 20653574 (-) True G114901
TU169801 other upstream 1354884 21012607 ~ 21017105 (-) True G115003

Expression Profile