RNA id: TU169652


Basic Information

Item Value
RNA id TU169652
length 589
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G114888
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20576686 ~ 20577274 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTCTTTTACTTCCACACTTATCCATGTCGTAAATAAACACATGGTAGTGTTTTGTCGTCTTGCTGATGTCGCACGTTCCCAGTTTTAACTCTGAATGAGGGCCGTCGAcgcctaaaatgtatttgtgcacTTTAACGATCATTTTCTTTAATTGACAAACGACGTTCACTCCGTGTGATCGCCCGCGGCGGCGGGAGGCCTCCGGAAACGTTACGGCGGTGCGCGGGACGAGAACTTCTTTCGTCTCCTCGGGCAGTTGCTCACGGCCTGATCCACGTGTCGGAGAAAACTGCTTTTTGTCCAAAAGAGGAACCCTTGAATGCTGAAAAACGGGAAGTTGCAAATATGGCGAGGCGGCACGCTCGACGGCAGATCCGTCGAAATCGTCTACAACTTGTTTTACGTCCAGCGCTGAGGTGATATTGTTAACGCTAGCGGGCTTTGACGCGGACACACACGGAGAGGAGGAGActagtaaaataaacattagtaTAAAATAAAGCTTCATATCTCTATCTTGTAATAATCGCTATTTTACTCGAACCTGTCGCCTGCTTCTCTACCGGTTCGATCGGGCGGGTCGCAAA

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0051704 multi-organism process biological_process
GO:0046332 SMAD binding molecular_function
GO:0070412 R-SMAD binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169585 lncRNA downstream 56560 20500520 ~ 20520126 (-) True G114853
TU169500 lncRNA downstream 90559 20485895 ~ 20486127 (-) True G114804
TU169499 lncRNA downstream 90961 20485396 ~ 20485725 (-) True G114803
TU169497 lncRNA downstream 92615 20483801 ~ 20484071 (-) True G114801
TU169494 lncRNA downstream 100939 20475517 ~ 20475747 (-) True G114798
TU169622 lncRNA upstream 58851 20636125 ~ 20637340 (-) False scn1ba
TU169621 lncRNA upstream 58864 20636138 ~ 20637340 (-) False scn1ba
TU169682 lncRNA upstream 99780 20677054 ~ 20680221 (-) True G114908
TU169699 lncRNA upstream 146897 20724171 ~ 20725671 (-) True G114924
TU169727 lncRNA upstream 191470 20768744 ~ 20769087 (-) True G114943
XM_043260196.1 mRNA downstream 184820 20389474 ~ 20391866 (-) True si:ch211-215k15.4
XM_043260302.1 mRNA downstream 189070 20386077 ~ 20387616 (-) True pkdc
XM_043261880.1 mRNA downstream 191230 20379180 ~ 20385456 (-) False herpud2
XM_043261881.1 mRNA downstream 191395 20379180 ~ 20385291 (-) True herpud2
XM_043260151.1 mRNA downstream 263447 20305818 ~ 20313239 (-) True dpy19l1l
XM_043261474.1 mRNA upstream 3008 20580282 ~ 20592827 (-) False fli1rs
XM_043261477.1 mRNA upstream 3008 20580282 ~ 20592826 (-) False fli1rs
XM_043261478.1 mRNA upstream 3008 20580282 ~ 20592539 (-) False fli1rs
XM_043261473.1 mRNA upstream 3008 20580282 ~ 20592335 (-) True fli1rs
XM_043261475.1 mRNA upstream 3008 20580282 ~ 20592332 (-) False fli1rs
TU169487 other downstream 124236 20441965 ~ 20452450 (-) False G114793
TU169489 other downstream 124236 20441965 ~ 20452450 (-) True G114793
TU169372 other downstream 409072 20166795 ~ 20167614 (-) False G114715
XR_006252818.1 other downstream 1155592 19416962 ~ 19421094 (-) False cd22
TU168715 other downstream 1755598 18815216 ~ 18821088 (-) False rpz
TU169673 other upstream 74703 20651977 ~ 20653574 (-) True G114901
TU169801 other upstream 435333 21012607 ~ 21017105 (-) True G115003
TU169949 other upstream 798616 21375890 ~ 21378836 (-) True G115093
unassigned_transcript_2161 other upstream 831670 21408944 ~ 21409025 (-) True trnas-aga_117
unassigned_transcript_2162 other upstream 832686 21409960 ~ 21410031 (-) True trnae-cuc_38

Expression Profile