RNA id: TU169682


Basic Information

Item Value
RNA id TU169682
length 1447
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G114908
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20677054 ~ 20680221 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaacacacagacatgtagtacattaacatttcttttattaaatcatcATAAGGCCGCTGAGTAGTGTGCAGACTTCTCAAAGAAAAACATGCCCTGTGTTCAGAGCATTGCCCACTGAAGAACTCCAGATACGCCCGATAAGGCACATTTAGAAACATCGGATCCATTACCCCACCTGAGTAATGTGCAGTCTGTCACGTCAAACTATAATCATTCACAGCTGAACAACAGAGTTTTCTAAGTACCTTCTATTATGGTGATGCGAATAGTTATCAAATATAAATTCTCAAAGTGAAGAATGAAACATCTCGAGTCACACCTTACATCCCCAAAACAacaaatcagaaatgtttacaGAGGTTAAACTCACATAAAATACAATGTGTCGAGTAATTCATGAAGTGAGAGGCAGCACGTTGATTATAAAAGCCAACGTTATTACTAAGACAATCAAAGGCAATTACGacaattcagaaataaaaaaaattaactgaaaaaatagGAGGACATCTGTATATGTAAAGTGGTTATTACTACCAAAGTGGCCAGTTCTGACTGAGATACTCGAAATGGAAGATATGTATAATATCCATCCACCCGCCAGTATAGCAATACAGTACATAATCGAAAGTACTAATTTACCGAACAGGAAATGCACCAGACTCACAGAGTAGTGCAGCAAACAATTTTGCTTACGTAGCACATCGGCCTGCTTCGCTATTTCCGTCACGTGGCAGAAAACTAATTTTACCCCTCCCTAAGACTCGGCCTCACCCAGTGAGACACGTCAAGCCACGGGCGCCCGAAGCTATGCTTCAGTCATCATGAAAGAAATGTAAGGAGAGAGTGCAGCTTGATTCTAAGGCAACGGAGGCTTTTAAATGGTGCCCATGGGCACAGAGGATAGATGAAgagtctgtctgtcaggaagcaCACACTTCCAGCAGATTGGTCCGTCACGGAGTCTGCAAAGCGATCAGTGCGTGGACCGGTTGATGAAGTTTCTGCAGCATCCTGACCGATAAAGTGAACCAGTGAGCGCAGGatcagaataaaatgtaaaactttggagaaaaaggaggaggaggaaagacaGAGATTCACGGGACCACTAGATGGCACCACTGTTACAGAGGAAACAGAAGGTGTGCGGTGCAGTAAAGGCATGACGTCCCTAGAATTCACTGGCCATGTGCATGAGGGTGAAGTGGTCTGCAGGCAGTGCGGCGTTGACGTTAAGACTTGCGCCTCCGGGACCCGCAAGAACGCTGGGAGTCAACTATGAAGCAGGCTTTTTTTTGGTCGTGTGCAGGCCTGCTTCGGTGCCAATGTTGACCGTGATGTTGGTGTAAAGCGGCTGGTAATCCCGGGACGTGATCTCGTACTCCACGGTATTCATGCCGTCTTCTTTCCATGTGTGCCGGGTCTTGGCCAACATGTTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169622 lncRNA downstream 39714 20636125 ~ 20637340 (-) False scn1ba
TU169621 lncRNA downstream 39714 20636138 ~ 20637340 (-) False scn1ba
TU169652 lncRNA downstream 99780 20576686 ~ 20577274 (-) True G114888
TU169585 lncRNA downstream 156928 20500520 ~ 20520126 (-) True G114853
TU169500 lncRNA downstream 190927 20485895 ~ 20486127 (-) True G114804
TU169699 lncRNA upstream 43950 20724171 ~ 20725671 (-) True G114924
TU169727 lncRNA upstream 88523 20768744 ~ 20769087 (-) True G114943
TU169735 lncRNA upstream 101582 20781803 ~ 20835235 (-) True G114947
TU169792 lncRNA upstream 437928 21118149 ~ 21120540 (-) False G114997
TU169793 lncRNA upstream 437928 21118149 ~ 21120584 (-) True G114997
XM_043260667.1 mRNA downstream 26117 20636130 ~ 20650937 (-) True scn1ba
XM_043260665.1 mRNA downstream 26189 20636130 ~ 20650865 (-) False scn1ba
XM_043260848.1 mRNA downstream 69152 20604089 ~ 20607902 (-) True si:ch211-225p5.8
XM_043261477.1 mRNA downstream 84228 20580282 ~ 20592826 (-) False fli1rs
XM_043260715.1 mRNA upstream 1204 20681425 ~ 20686877 (-) True mtdhb
XM_043260713.1 mRNA upstream 19776 20699997 ~ 20706330 (-) True ubxn11
XM_043260711.1 mRNA upstream 56728 20736949 ~ 20741672 (-) True aste1a
XM_043260062.1 mRNA upstream 84417 20764638 ~ 20767365 (-) True si:dkey-11p23.7
XM_043261002.1 mRNA upstream 146007 20826228 ~ 20866224 (-) True LOC122360416
TU169673 other downstream 23480 20651977 ~ 20653574 (-) True G114901
TU169487 other downstream 224604 20441965 ~ 20452450 (-) False G114793
TU169489 other downstream 224604 20441965 ~ 20452450 (-) True G114793
TU169372 other downstream 509440 20166795 ~ 20167614 (-) False G114715
XR_006252818.1 other downstream 1255960 19416962 ~ 19421094 (-) False cd22
TU169801 other upstream 332386 21012607 ~ 21017105 (-) True G115003
TU169949 other upstream 695669 21375890 ~ 21378836 (-) True G115093
unassigned_transcript_2161 other upstream 728723 21408944 ~ 21409025 (-) True trnas-aga_117
unassigned_transcript_2162 other upstream 729739 21409960 ~ 21410031 (-) True trnae-cuc_38
XR_006252759.1 other upstream 730070 21410291 ~ 21411772 (-) False mettl6

Expression Profile