RNA id: TU169735


Basic Information

Item Value
RNA id TU169735
length 1926
lncRNA type sense_over
GC content 0.39
exon number 3
gene id G114947
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20781803 ~ 20835235 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTTTCAGAGCCCAGgagccatttatttattgcttaacTGGAATGGAGAGATGTTTACAAAagcatttctgcaaaatgttCCATGCAACCTTTTGTAGAAACTCTGCTGGTATTCAAACAGACCCGCTAGACCTTTAATcttaaaaatcatcaaaatcCTTAGCAATAATTAATCCTCCCAGATGATTGATCCACATTTTAAGATTAACGAGAAAGTGGCTTATCCTAAAGCGTCAACACAATATCAGGATTTATAAACACAATGCtattcacacagaaagcagCAGTCAGTTGTACAGCACAGGAAGGTGGAAGCGTAAGGCAGATTAGTGTCTCAAGAAACTTGCAGTCCATTCATCTCCGCGggcatttaaacaaacacatttggGCCTAAACGCACGTTCCTCCAGATAAAGGCAAATATATGTCAGGTTACTAAACTTTCATTAGATTCAACGcgctcacaaaaacacaatctgGGCTCACATGGAACAAgataaagcacaaaagaaatataCAACATTTCCGGTTCCACTCAATACAAAAAAGGCATTTCAataggagaaagaaaaaatatctcCGACTGTACACCCCTGACGTCCCTTGCACAGCAAAACATGATAATCACAGGGCCATAACATCTTCATCGCGCTGTCACCTCACTCATTTCGACAGCTCACTCAACATCTCTACAGTAatttaatgacatttgtgtATACAGtgcaagtgtttaaaaaaaatcatgacttCTTATCCAATATATCCAAAACAGGAGATAAATAATTACTGTCAACACGATCAATCATATATTATTTCAGGAATGCATATAtaaccataaaaacaaaaggGATTAGCACGTTTTTAAGAAATACGGCGCATGTTTTTGTACAGAAAATGTGCAGCACATACACTTTAATAAAGAtggaatgacttttttttgcgTAGTCATACAAAAGTATACGGTCAAAATATGTTTAGTTTGCTTTACAAAAGGATATCCGTGTGAAAATAGTAATGGCAAAATAAAACGATCCCCACACAGACGAATCCCTACGAAGGAATGCTTTCTACTTGTAAAATTagtacttattaaaaaaatattacaaaaataaatccagGCACAGTATAAAACTGGTTCAGCTCGCCAGTTAGTAACTGACTGAAgtggaaatgttaaaaatttttgttttgtttttttttgcactttgggtaaaaacatttctcatgtATAAAAATTGTTGGACGACTGGGAAAAGCTTTTGAATATGCGGGCAAAATGCTTCAGTTTACCGAGTCAGTTCCATTAGCATTAAGTTTCTCACTCTCTGGTCTGGGCGCGCGCTCTGCTTGTTCATTGTTTCCCTTTCGGCAAGGAAAACCACGCTTTTTTATGATCAAAGCAGAGTCAATAAAGAAGACCACCGTAGCCATAAAGCCAAATGCCTGTAACACAGGAAAAGAGAGTTAAATGTTAGCCGATCAGTTGTAACTATGTTGTCatatcaaacaaaaacacaaatctagCTCCATCATACCACTGCGCCCCGCTCCAGATCTGTCTGACCATTGTCTGCTGCAAACACGATGCTGGCAAGGAGGAACAGGATTGCCATGATTGCcgtataaaaaaaatccCCAGAGCAGGCCAGCTGTTAATTCCAACTCTCTGGTGCAACGGCGtggccaggaggatgaggagcaGCAATGTGAAGAGGAAGGCTGTGCAACTGacaaattcaaaaaaatagAGTGGTCCGCATTGTGAACAGTTGGACACGATCTCCTCCATCACAAAAGCCACAAACGAAAGGAGCTGAGGAGACACAAACGAAATCCAAGCGCATTAATTAACCTCCAGGTGGCAGTATCagcttatttttcatttcaataacTCCCACGTACCAGACCCTATGAATGATTTGgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169727 lncRNA downstream 12716 20768744 ~ 20769087 (-) True G114943
TU169699 lncRNA downstream 56132 20724171 ~ 20725671 (-) True G114924
TU169682 lncRNA downstream 101582 20677054 ~ 20680221 (-) True G114908
TU169622 lncRNA downstream 144463 20636125 ~ 20637340 (-) False scn1ba
TU169621 lncRNA downstream 144463 20636138 ~ 20637340 (-) False scn1ba
TU169792 lncRNA upstream 282914 21118149 ~ 21120540 (-) False G114997
TU169793 lncRNA upstream 282914 21118149 ~ 21120584 (-) True G114997
TU169853 lncRNA upstream 448229 21283464 ~ 21314746 (-) True G115042
TU169865 lncRNA upstream 495777 21331012 ~ 21331358 (-) True G115051
TU169954 lncRNA upstream 553580 21388815 ~ 21389147 (-) True G115098
XM_043260062.1 mRNA downstream 14438 20764638 ~ 20767365 (-) True si:dkey-11p23.7
XM_043260711.1 mRNA downstream 40131 20736949 ~ 20741672 (-) True aste1a
XM_043260713.1 mRNA downstream 75473 20699997 ~ 20706330 (-) True ubxn11
XM_043260715.1 mRNA downstream 94926 20681425 ~ 20686877 (-) True mtdhb
XM_043260665.1 mRNA downstream 130938 20636130 ~ 20650865 (-) False scn1ba
XM_043261001.1 mRNA upstream 203288 21038523 ~ 21039535 (-) True LOC122360415
XM_043260999.1 mRNA upstream 221065 21056300 ~ 21102468 (-) True LOC122360412
XM_043261534.1 mRNA upstream 267492 21102727 ~ 21105217 (-) True LOC122360714
XM_043261386.1 mRNA upstream 285534 21120769 ~ 21138481 (-) True LOC122360614
XM_043261888.1 mRNA upstream 303935 21139170 ~ 21146077 (-) False dek
TU169673 other downstream 128229 20651977 ~ 20653574 (-) True G114901
TU169487 other downstream 329353 20441965 ~ 20452450 (-) False G114793
TU169489 other downstream 329353 20441965 ~ 20452450 (-) True G114793
TU169372 other downstream 614189 20166795 ~ 20167614 (-) False G114715
XR_006252818.1 other downstream 1360709 19416962 ~ 19421094 (-) False cd22
TU169801 other upstream 177372 21012607 ~ 21017105 (-) True G115003
TU169949 other upstream 540655 21375890 ~ 21378836 (-) True G115093
unassigned_transcript_2161 other upstream 573709 21408944 ~ 21409025 (-) True trnas-aga_117
unassigned_transcript_2162 other upstream 574725 21409960 ~ 21410031 (-) True trnae-cuc_38
XR_006252759.1 other upstream 575056 21410291 ~ 21411772 (-) False mettl6

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021386 True 2636 mRNA 0.38 5 NC_007127.7 41468529 ~ 41488023 (-)