RNA id: TU169949


Basic Information

Item Value
RNA id TU169949
length 2862
RNA type TUCP
GC content 0.44
exon number 2
gene id G115093
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21375890 ~ 21378836 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caatgcatatatttttctcaaaattagTATCTAATAATGATGATATGATGGATTACATTCAGTTTTCAGCCCTTTCAGAGTTTTACATGAGAACTAAAAAATGTACGAGAAACAGAAAATCCCCAAAATCCATCCAAAAACAAGGGAATCATAAATTACAATGTTCAAgaaattacaaaagaaaacgAATGCCAATCCTGTTTATCCTCTACTCAGATCTATTCTGTTGTGTTTGCAGAGAGAGTAAAGTGCTGGTAGCTGATCCAGAGGTGTTCAGGAAACGCACACATGAACCACACGGAAACgctatgaagaaaaaacaaaaagcagcaaGCCCAactaagaaaatataaaaaaaaaaaaaaacactgtacacAAGTTTACAACATGCAAAACCAAAATCATCTCAGAATATTACAAcacaagtaaaattaaaacaaatgatctCAGGTTAGATTTggaacaattaaaacaattcattaaatcaaatataaagcCAACCATAACTATCCTGGAATCTAACGTTATATTCCAAAAACCTATTTCTAAATCTCAAATAAGTCTcacataaatgtgtaaaaaaaaaaaaaaaaaaaacttttgacttAAGTGTATCTGTCATTGCATATAAACTAGACGGTCTGAGCAGGCTGAGTTAGGTTCATTAGATATCCCTTTTCAACGTCAGTTTTGTTATTCTGACAAACTAAATATGCCGTCTTCACAGGTGATCAAGTATTCGGTACTGAGACACAGTTCTCATGATTCTCCCACCTGCCAACTTGTGTAGAAGTAAAAACCACTGTAAACCTGGAAGATCGCTGATGAAATATACTACTGTATCTCTCTAAAGTGTCCAGAGTCATTTcttaaaacaacacaacactTTGGAAAGCTGTTAGTGCAGTTTTTCTTGTGTTGAACAGCCATAAaagacaaactaaaaaaaaaaaacaaaaggtggCTGTGTCACAGGCGGTAGCTTCCTCATAATGCTTTCGATTCCCGTTCAAAACGTGTAGGATCGACTGTTAAGGGCCAACATGTGACTTCTCGAACACAAAGACCCCAAAGAGAGAGGGGGCAATGTATAGCACATCCTTTGCCTTGGTGTCATGTGATTCCTGTGGGCTGCATGCTAATGTGGCTGTATGTATAGAGCTGAAATCAGGGCTGGAGAGACATGCCAACATAGTTTAGGGCATGTGGGCTACAGATGCAAGATGTCACAAAATACTCGATTCGTGGGAATGTCCAAAAGCTATTCGGACTGGACTGTCCACAACTGAAACTGTCAGTCTAGTTTTAATCATAGCTACAGTCATACGAATAAAAAACGGGGGTACCTGTGCACCTCTGAACAAAACAAGTCACGTGATGTGCCATCAAACGAAGGCAGGTGTCTCAAAGTGAAGAAATCAGCCCAAGTCATAAATAGTTTCGAGGATCCTGAGGACAAATAAGAAGGCACTAAGGCAGCGACGACCTTGTCAGACGAATTTTCTACGACTTACTACACCCCAGCGTTATATACACGCATTATATACACTTTGTAGCGTCTTTCTGATTTGTCGTTTGCAATTACTAGAACTGAGCAAAGTGAAAAACAGAAGACCTTCACCTGTTCGATGCACACTTACTCGGTTTGTTAGTGGTTAGCTGTTCAGAGCATTCAATGCGGTTCCTTGTTTAAAACCTAGTTATAATGCACTACACGGTTTCACCTGAGGGAGCGTATGCCTAGGAACAGCCCGCAATCACATTACACAACATACTCTTCCTTCAGCCAATAGCAGCATCTCTCAGTAAGAATGCGGTGGCTAAAAGCAATGAAGGGGgagaaagaagatgaaagagCACCATTGCcaagaaatgcatttatatgaaagaGTTTAAAATGGACTACGAGAGTGACTTCAATGTGAAAGCAGAGCGAGCCGACAAGTAGTGTTCATTAATACGCAGGAACGGTTCCCATCAAACCTTATGTTCATATGCACAGGGGGCTTTTATCGTTTTGGGAAAGTGTTATTGCCACAGGAATCTCTGCGAACCCTGAATGAAAATTAGACTAAAATAATGGGATATGATCTGTAGATTGTCAATATTCCTAAGAGTAAGCCTCAGTCACTGctgtcgtcgtcgtcgtcgtcgtctgAGATATTGTTGAGCTCCGAGCGGCTGTAGGAGTCTGAGCGGGACGGGAGGGTGCCGCCCGTGGAGAGCTGCTTGTAACAGAACTCGCACACCCGCACCGGTTTGGATGACTGACTGGGAAGCAGGAACTTCTTCTCTGAACACGGGCCGCACACGACAAAGCCGCATTTCCGGCAGTGGTGGCGGCGGTTGACCGGGGTGAATTTCATCTTCTGGCAGCGCATGCACACTGTCGCCTCCGAGTCGGGCACCCAGACGGCCGCGTGCTCGCCGGTGGGAGATTTCCCGCTTTTTTCCAGCAGATCCGAGACGCACTTGCTGATGTGGCTCATCCACTCGGACTTCTCCGTTGCCGTGGCGGCGTAGACGGCGAAGGATTTGGTAGGCGTTTTAATGAGCCAGCCGTTGCGCAGGTCGCCCTCGTCTTCTACCGTGTCTATGGTGACGCTCTCCAGAGGGATGATGTGCTGCTTATTGTACTTCTTCTTCTGGATGACGATGTTGCCGTACACCAGGATGTCGTTGAAGAGGAAGAACTGCCGGGCTTTGGGTCTTTTGCGACATAACTTTGTCAGAACGCCCTCTCCGATCAGCACTCGACCTGGGATGGCCAGCGGTTGACCTGCGGTGCCAAAGCATGCTTCCACGACTCCGATGCGCTTAGAGTTGGCCTCACTGTTCGCCAAGCGGTCTACCATCTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169865 lncRNA downstream 44532 21331012 ~ 21331358 (-) True G115051
TU169853 lncRNA downstream 61144 21283464 ~ 21314746 (-) True G115042
TU169793 lncRNA downstream 255306 21118149 ~ 21120584 (-) True G114997
TU169792 lncRNA downstream 255350 21118149 ~ 21120540 (-) False G114997
TU169735 lncRNA downstream 540655 20781803 ~ 20835235 (-) True G114947
TU169954 lncRNA upstream 9979 21388815 ~ 21389147 (-) True G115098
TU169974 lncRNA upstream 227144 21605980 ~ 21614179 (-) False cenpw
TU170024 lncRNA upstream 446362 21825198 ~ 21825437 (-) True G115155
TU170039 lncRNA upstream 494990 21873826 ~ 21874051 (-) True G115170
TU170171 lncRNA upstream 851404 22230240 ~ 22237066 (-) True G115262
XM_043261010.1 mRNA downstream 10689 21360793 ~ 21365201 (-) True LOC122360424
XM_043260618.1 mRNA downstream 29290 21333650 ~ 21346600 (-) True nagpa
XM_043260869.1 mRNA downstream 45899 21322911 ~ 21329991 (-) True tp53inp1
XM_043260273.1 mRNA downstream 54803 21315779 ~ 21321087 (-) False ccne2
XM_043260272.1 mRNA downstream 54803 21315779 ~ 21321087 (-) True ccne2
XM_043261819.1 mRNA upstream 26427 21405263 ~ 21408968 (-) False cfap418
XM_043261820.1 mRNA upstream 26792 21405628 ~ 21408967 (-) False cfap418
XM_043261821.1 mRNA upstream 27127 21405963 ~ 21408964 (-) True cfap418
XM_043260351.1 mRNA upstream 31123 21409959 ~ 21411771 (-) True mettl6
XM_043260090.1 mRNA upstream 34032 21412868 ~ 21431807 (-) True rspo3
TU169801 other downstream 358785 21012607 ~ 21017105 (-) True G115003
TU169673 other downstream 722316 20651977 ~ 20653574 (-) True G114901
TU169487 other downstream 923440 20441965 ~ 20452450 (-) False G114793
TU169489 other downstream 923440 20441965 ~ 20452450 (-) True G114793
TU169372 other downstream 1208276 20166795 ~ 20167614 (-) False G114715
unassigned_transcript_2161 other upstream 30108 21408944 ~ 21409025 (-) True trnas-aga_117
unassigned_transcript_2162 other upstream 31124 21409960 ~ 21410031 (-) True trnae-cuc_38
XR_006252759.1 other upstream 31455 21410291 ~ 21411772 (-) False mettl6
TU169979 other upstream 181385 21560221 ~ 21561060 (-) True G115116
TU169980 other upstream 181385 21560221 ~ 21561216 (-) False G115116

Expression Profile